KEGG   Seriola dumerili (greater amberjack): 111237904
Entry
111237904         CDS       T05606                                 
Symbol
drosha
Name
(RefSeq) ribonuclease 3
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    111237904 (drosha)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111237904 (drosha)
   03009 Ribosome biogenesis [BR:sdu03009]
    111237904 (drosha)
   03036 Chromosome and associated proteins [BR:sdu03036]
    111237904 (drosha)
Enzymes [BR:sdu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     111237904 (drosha)
Messenger RNA biogenesis [BR:sdu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     111237904 (drosha)
Ribosome biogenesis [BR:sdu03009]
 Eukaryotic type
  90S particles
   RNase
    111237904 (drosha)
 Prokaryotic type
  rRNA processing factors
   111237904 (drosha)
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     111237904 (drosha)
SSDB
Motif
Pfam: Ribonuclease_3 Ribonucleas_3_3 dsrm
Other DBs
NCBI-GeneID: 111237904
NCBI-ProteinID: XP_022622936
Position
Unknown
AA seq 1354 aa
MSFHQDRGGTRGGMPSGQHGSPQSYRPTNLRPPPPQPPVPPYHYDPQTPPSSGYHGNNNY
MPPHSDFMQYPPPAPSQTPSSLNQCPVRPPFPKPPVRQGFLEPPPNFPPPPLPSSTGGPT
QGSQVSAQNAYHPYMMPPVPPPPLPHPPMPHPMASQSMSYHPPYSMNYPHPPHPPFPPPT
FSPGYTQSPSSYKPDHSFRHGGQYKYEKPMDNRRSPERGYRHDDHRQKGYGYSSQGDRHK
MEFPGERKDRGRSPDRRVRPEGGRYRSEYDRGRTPPRHRSRDRSRERHRHRESRRSQSPD
RHRKRPRSRSTSRDRKRGRWEEERDRRSEGSSAPSRERSYSSIRTRDSDETFSDRERERE
RERERDRDREKDKEKGDDEKEEEELLKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKLR
DLYERFEEELGRRQERAKDARPKWDPPKTKLDEDPDDSSSESDCESDGEGSTCSSSSDSE
VFDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEESVKQ
CRPMNNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTNIPLCRV
IRFNIDYTIHFIEEMTPENYCVRGLELFASYLFQDMLELYDWNLTGPEFDNEASGCQRFH
FMPRFVRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELEWQKYAEECKGM
IVTNPGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKL
RHLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHA
MMLPVLTHHIRYHQCLMHLDKLIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNC
GIRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLT
SVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAM
ANCFEALIGAVYLEGGLEEARQLFGRLLFNSEDLREVWLNYPPHPLQVQEPQTDRQLIET
SPVLQKLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE
YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADL
LESFIAALYIDKDLVYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD
IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQ
KRFIERKYRQELKEMRRERERQEKETDEVEECRK
NT seq 4065 nt   +upstreamnt  +downstreamnt
atgtctttccatcaggatcgtgggggtaccaggggaggaatgccctcagggcagcatggc
tcccctcaaagctatcgacccaccaacctgaggcctccccctccccagcctccggtgccc
ccataccactatgatccccagactcctcccagttcaggctaccatggaaacaacaactac
atgcctccccactctgacttcatgcagtatcctcctccagcaccatcccagactcccagt
tctcttaaccagtgtccagtgcgcccaccttttcccaagcccccagttcggcagggcttc
ctagaacccccacctaactttccacctcctcccttgcccagctccacagggggtccgaca
caagggtcccaggtgtctgctcagaatgcctaccacccttacatgatgccacctgtgccc
ccaccaccattaccgcacccgcccatgcctcaccccatggcttctcagtctatgagctac
caccctccgtactccatgaactacccccatcctccccacccccctttccctcctcccacg
ttcagccctggctacactcagagccccagctcatataaaccagaccacagcttcaggcat
gggggtcagtataagtacgaaaaacccatggacaacaggaggtctccagaaagagggtat
cgccatgatgaccacaggcagaagggctatggctacagtagccagggtgataggcacaaa
atggaatttcctggagagaggaaagatcgcgggaggagtccagacaggcgtgtcaggcca
gagggtggaaggtacagatctgagtacgacagaggtcggactccccccagacacaggagc
agggatcgcagcagagagaggcatcgtcacagagagagtcgaagatcccagtcacctgac
aggcacagaaagaggcctcggagtcggtccacaagcagagacaggaaacgtggtcgctgg
gaagaggagagggacaggaggtcggagggctcctcggccccgagcagagagcgcagctac
tcctccatcaggaccagagactccgacgagaccttcagtgacagagagcgtgagcgtgag
cgagagcgggaacgagacagagaccgagagaaggataaagagaagggggatgatgagaaa
gaggaggaagagctgctgaaacctgcctggatccgttgcacccacgctgagaactactac
tccaatgaccccatggaccaagtgggagactctacagtcgtggggaccagtaaactgcgg
gacctgtatgagcgtttcgaggaagagttggggaggagacaggagcgagccaaggatgct
cgaccgaaatgggacccacccaagaccaaactggatgaggatccagacgacagcagcagt
gagtcagactgtgagtcagatggtgaaggaagcacctgctccagcagctctgactctgag
gttttcgatgtcattgccgagatcaagagaaagaaggctcaccccgaccgcctgcatgag
gagctgtggtataacgacccaggacagatgaatgatggtcccttgtgcaagtgcagtgcc
aaggccagacgtacagggatccgccacagcatctacccgggggaggagtctgtgaaacag
tgccgtccaatgaacaacaatgcaggaaaactgttccactacaggatcactgtctctcct
ccaactaacttcctgactgacaggccgactgtgatcgagtacgatgaccatgagtacctg
ttcgaaggcttctctctcttctcccacacacctctcactaatattccattgtgccgtgtg
atccgcttcaacatagattacaccattcacttcatagaggagatgacaccggagaactac
tgtgtgcgaggcctggagctgtttgcctcctacttgttccaggacatgcttgagctctat
gattggaacctgacaggtcctgagtttgacaacgaggcctccggatgccagcggtttcat
ttcatgccccgttttgtccgattcttacctgatggcgggaaggaggtgctgtccatgcat
caggtgctgctctacctgctgcgcagcagcaagcccctggtccccgaggaggagattgca
gacatgctgcagtgggaggagctggaatggcagaaatacgcggaggagtgcaagggcatg
atcgtcaccaacccgggcatgaaacccagctcagtgcgtatcgaccaactggacagggag
cagttcaaccccgatgtcatcaccttccccatcatcgttcatttcgggatccgtccggct
cagctcagctacgccggagatcctcagtaccagaagctgtggaagagctatgtgaaacta
cgccacctgctggccaacagccccaaggtcaagcagattgacaagcagaagctgacacag
agagaggaagctcttcagaagatccgtcagaagaacactatgcgccgtgaggtgacagtg
gagctcagcagtcagggcttctggaagactggcatccgctccgacgtctgtcagcatgcc
atgatgctgcctgttctcacacatcatatccggtaccaccagtgtctgatgcacctggat
aagctcattggctatgtcttcaaggagcgctgcctccttcagctggccatgactcacccc
agtcaccatctcaacttcggcatgaatcccgaccatgcccgcaactcgctttctaattgc
ggcatccgccagcccaagtatggggacaggaaggtccaccacatgtacatgaggaagaag
ggaatcaacacattgattaacatcatgtctcgtttggggcaggatgacccctccccttcc
aggatcaatcacaacgagagactggagttcctgggtgatgctgttgtcgagttcctcacc
agtgtccacttgtactaccttttccccagtttagaggagggtggcttggccacatacaga
acagccatcgtacagaaccagcacctagccatgctagccaagaaactggagttagatcgc
ttcatgctctacgctcacggaccggatctgtgccgggagtcggacctgcgacacgccatg
gccaactgcttcgaggctcttatcggtgcagtgtatttggaaggaggcttggaggaggct
cggcagctctttggtagactgcttttcaacagtgaggacctacgggaggtctggctcaac
tacccgccacaccccctgcaggtccaggagcctcagacagacagacagctgattgagacg
tctccagtccttcagaaattgaccagcttcgaggattctattggcgttttgttcacgcat
gtgcgtctgctggccagagctttcaccttgaggacggtgggcttcaaccacctcaccctc
ggccacaaccagaggatggagtttctgggagattcgatcatgcagctggtggccacagag
taccttttcatccacttccctgaccaccatgaaggacatttaacactgctccgcagttcg
ctggtaaacaaccgcacgcaggccaaagtggcggaggagctgggcatgcaggagttcgcc
atcaccaatgacaaaaccaaacggccggtcgccctgcggaccaagactctggctgactta
ttggaatctttcatcgccgctctctacattgataaagatctggtgtatgtgcacaccttc
atgaatgtctgctttttcccccggctgaaggagttcattctgaaccaggactggaatgac
ccaaagtctcagctgcagcagtgctgtttgaccctgagaacggagggcaaggagcctgat
atcccactgtacaagaccctgcagacagtggggccctcacacgcccgcacctacaccgtt
gccgtatatttcaaaggggagcgtatcggctgtggcaaaggcccaagcatccaacaggcg
gaaatgggagctgcgatggatgcactcgaaaaatataacttcccacagatggctcatcag
aagcgcttcatcgagcggaaatacagacaggagctgaaggagatgagacgagagcgggag
cggcaggagaaggagactgacgaggtggaggaatgcaggaagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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