KEGG T00306: SDY

Shigella dysenteriae Sd197: SDY_3024

Entry

SDY_3024          CDS       T00306

Symbol

ygdE

Name

(GenBank) conserved hypothetical protein

K06968

23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]

Organism

sdy Shigella dysenteriae Sd197

Brite

KEGG Orthology (KO) [BR:sdy00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sdy03009]
    SDY_3024 (ygdE)
Enzymes [BR:sdy01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.186  23S rRNA (cytidine2498-2'-O)-methyltransferase
     SDY_3024 (ygdE)
Ribosome biogenesis [BR:sdy03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    SDY_3024 (ygdE)

SSDB

Motif

Pfam:

RLMM_N RlmM_FDX FtsJ MIT_C Spt5-NGN

Other DBs

NCBI-ProteinID:

ABB63043

ShiBASE_China:

SDY3024

UniProt:

Q32CB2

Position

complement(2796881..2797981)

AA seq 366 aa
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELP
FSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGELRVEVADTNESKELLKFC
RKFTVPLRAVLRDAGGLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKF
PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVD
NGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRE
TIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVG
GRRDER

NT seq 1101 nt +upstreamnt +downstreamnt
atgaataaggttgtattgctgtgccgtccgggctttgaaaaagagtgcgccgcagaaatt
accgataaagccggccagcgggaaattttcggttttgcccgcgtgaaagagaatgcgggt
tatgtcatttatgaatgttatcaacctgatgatggcgataagttaatccgtgagctgccg
ttcagttcattaatttttgcccgccagtggtttgtggtgggggaactcttgcagcatttg
ccgccagaagatcgtattacccccattgtcggcatgttgcagggcgtagtagagaagggc
ggtgaactgcgtgttgaagttgccgataccaacgaaagcaaagagttgctgaaattctgc
cgtaaatttactgttccgctacgcgctgtcttgcgcgatgcgggggggctggcgaactat
gaaacgccgaagcgtccggttgtgcatgtattcttcattgcaccaggttgctgctatacc
ggttactcatacagcaacaataattcgccgttctatatgggcattccgcgcctgaaattt
ccggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttatt
cctgcggatgagtgggatgaacgcttggcgaacgggatgtgggcggtggatttaggcgct
tgccctggcggctggacctaccaactggtgaagcgcaacatgtgggtttattccgtcgac
aatggcccgatggcgcaaagtctgatggataccggacaggtgacgtggctacgggaagac
gggttcaaattccgtccgacacgcagcaatatctcctggatggtatgcgatatggttgaa
aaaccggcgaaagttgcggcattgatggcgcagtggctggttaatggctggtgccgtgaa
accattttcaacctcaaactgccgatgaaaaaacgctacgaagaggtatcacacaatctg
gcgtatatccaggcacagcttgatgaacatggcataaatgctcagattcaggcgcggcag
ttgtatcacgatcgcgaagaagtgacggtgcacgtccgccgcatctgggctgcggtgggt
ggtcgtcgcgacgagcgataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   SHIBASE_CHINA (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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