KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_0197
Entry
STM474_0197       CDS       T01760                                 
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Brite
KEGG Orthology (KO) [BR:seb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:seb03016]
    STM474_0197 (ligT)
Enzymes [BR:seb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     STM474_0197 (ligT)
Transfer RNA biogenesis [BR:seb03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    STM474_0197 (ligT)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: ADX15938
UniProt: E8XHY6
Position
complement(217747..218277)
AA seq 176 aa
MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSSDKQRSL
AQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ
PFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQGRTRYAELQRWTLGE
NT seq 531 nt   +upstreamnt  +downstreamnt
atgtctgagccaaaacggctgttttttgcgattgacttacccgacgacgcgcgcgcgcaa
attatcgcctggcgcgccgcccattttgcgtctgaagacggacgccccgtggcagcggcg
aacctgcacctgacgctggcctttttaggcgacgtcagtagcgataagcagcgctcgctt
gcgcaactggccggacgaattcgacagccgggctttacgctacatctggatgacgccggt
cagtggctgcgttcgcgcgtggtgtggctggggatgcgccagccgccgcgcgggttgttg
cagttggctaatatgctgcgcgcgcaggccgcccgcagcggttgttaccaaagcccgcag
ccttttcacccgcatattacgctgctgcgcgacgccagccatacggtggctatcccgccg
ccgggcttttgctggtcatttccggtcacgtcgtttgcgctttacgcctcttcgtatggg
caaggccgtacccgctatgccgagctgcagcgctggacgctgggcgaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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