KEGG   Sphingomonas echinoides: B18_19420
Entry
B18_19420         CDS       T06681                                 
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sech  Sphingomonas echinoides
Pathway
sech03030  DNA replication
sech03410  Base excision repair
sech03420  Nucleotide excision repair
sech03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sech00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B18_19420
   03410 Base excision repair
    B18_19420
   03420 Nucleotide excision repair
    B18_19420
   03430 Mismatch repair
    B18_19420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sech03032]
    B18_19420
   03400 DNA repair and recombination proteins [BR:sech03400]
    B18_19420
Enzymes [BR:sech01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B18_19420
DNA replication proteins [BR:sech03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B18_19420
DNA repair and recombination proteins [BR:sech03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B18_19420
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B18_19420
   MMR (mismatch excision repair)
    DNA ligase
     B18_19420
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B18_19420
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: QLD76144
Position
4195816..4198200
AA seq 794 aa
MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDS
PTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAE
VEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEI
LEVRGEVFMSKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGF
GQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVV
FKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQV
AGVTVSNATLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHC
PVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGD
KIVEQLVDRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALG
IPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQL
RDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRADW
LDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLAGQT
WVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDE
DGLLKLFDEHGVAR
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgaccgacacccaggctgccgccgaacgcatcgcgcaactgcgaaccgaactggacacc
cacaattaccgttactacgtgctcgacgaaccgagcattcccgacgccgaatacgatcgc
ctgttccgcgagttgcaggcgctggaggccgagtacccgcaactgctgacgcccgactcg
ccgacccagcgggtcagcggcacgccggcctcggcgttcggcgaagtgcgccatgagatc
cccatgctcagcctcggcaacgccttcgaggagcaggacctgctggacttcgaccgccgc
gtacgcgaaggactggccgacctgttgcctggcggcgacctgctcggcggtggcgcggag
gtcgagtacagttgcgagccgaagctggacggcctggccgtcagcctgctctacgaacgc
ggccaactggtgcgcggcgccacccgcggcgatggcagcaccggcgaggacatcaccagc
aacgtacgcaccattcgcaacgtaccgctgaagctgcacggcgaaggctggccggagatc
ctcgaagtgcgcggcgaggtgttcatgtccaaggccggtttcgaggcgctcaacgccaag
gccgtggaaaccggcggcaagaccttcgccaacccgcgcaacgcggcggccggcagcctg
cgccagctggattcgaagatcaccgccagtcgcccgctggaattctgtgcctacggcttc
ggccaggtcagcgggacgctgccggacacccaggtgggcatcctcgaggcgttccgcggc
tggggtatccccatcagtcgcgagctgcgcctggtcaagggcgcccaggcctgccgcgac
tactacgacgacatcggtcgccgacgcgatgcgctggcctacgagatcgacggcgtggtg
ttcaaggtcaaccgcatcgccttccagcgcgaactgggcttccgcgcgcgcgagccgcgt
tgggcgatcgcccacaagttccccgcgcgcgaggagctgaccgagctgctgggtgtcgag
ttccaggtcggccgcaccggcgccgtgaccccggtggcacgcctcaagccggtgcaggtg
gccggcgtcacggtgtccaatgcgaccctgcacaacatggatgaagtcgcccgcctgggt
ctgcgcatcggcgatacggtggtgatccgccgtgctggcgatgtgattccgcaggtcatg
caggtggtgctcgagcgccgcccggcggatgcgcaggctatcgaggtgcccgagcattgc
ccggtctgcggctcggccgtggagcggacccagttggtcaagcgcagcaagggcaaggag
tcgatcagcgagggcgccatctatcgctgcgtcggccgcctctcctgtcaggcgcagttg
aagcaggcgatcatccatttcgtatcgcgccgggcaatggacatcgacggtcttggcgac
aagatcgtcgagcaactggtggatcgcgggctggtcgcctcgccggcggatctctatacc
ctgacctatgaacaggtgttcgagctggaagggttcgccgagctgtccaccaacaacctg
ctggcggccatcgccgacagccgcaagccttcgctggcgcgcttcatcttcgccctgggg
attcccgacgtcggcgaggaaaccgccaagctgctggcgcgttcgctgggttcgctcgag
cggatcggcaaggcgctgccggaagtgttgacctacctgccggacgtcggcgccgaggtg
gcctacgagatccacaacttcttcgccgacgagcacaaccgccaggtgatcgcccagttg
cgcgatgccgaacatggcgtgcagttgcaggaagagggcgaggtcgccgcggagttcgcc
gcttgtgcctcgctggccggtttcatcgacaagctgaacattcccttcatcgccgccacc
ggcgcggaaaagctggccagccgcttcggttcgctcgacggcatcatccgcgccgactgg
ctcgatctacgccaggtggagcgtctgcccgagcgagcggcgaaaagcctgcgcgatttc
ttcgacgagccggccaacgtgcagcgtgccctggccatcgaggcgcagttgcgtgagttc
ggcatgcattggcagagcgagcgcaaggcggtcgaaggcctgcctctggccgggcagacc
tgggtgctgaccggcaccttggaggcgatgagccgggacgtggccaaggacaagctggaa
gggctcggcgccaaggtggccggctcggtgtcggccaagacccactgcgtggtcgccggg
cccggcgccggctcgaagctggccaaggccaacgagctgggcgtgaaggtgctcgacgaa
gacggcctgctgaaactgttcgacgagcacggcgtcgcccgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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