KEGG   Parasedimentitalea marina: EBB79_17920
Entry
EBB79_17920       CDS       T05780                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sedi  Parasedimentitalea marina
Pathway
sedi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sedi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EBB79_17920 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sedi03021]
    EBB79_17920 (rpoC)
   03400 DNA repair and recombination proteins [BR:sedi03400]
    EBB79_17920 (rpoC)
Enzymes [BR:sedi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EBB79_17920 (rpoC)
Transcription machinery [BR:sedi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EBB79_17920 (rpoC)
DNA repair and recombination proteins [BR:sedi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EBB79_17920 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C RPOC_hybrid Phage_DsbA
Other DBs
NCBI-ProteinID: AZV79565
UniProt: A0A3T0N6D9
Position
complement(3677102..3681346)
AA seq 1414 aa
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLESEADQLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGSVFASLEEVQHAL
DAKQIHLHTKITARVMQIDEEGNEVYERFETTPGRMLLGDLLPKNAKAPFHLVNRLLRKK
EVQTVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMLIPDTKWPLVNETRD
MVKDFEQQYMDGLITQGEKYNKVVDAWAKCNDKVTEAMMGAISASKRDEAGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLSVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRDHDCGTDMAITAVAAVNDGEVVATLGERVLGRV
AAEDIKKPGTDDVLVAHGQLIDERMADSIEEAGVRSARLRSPLTCEAEEGVCVMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQAGQQSFQEAAVDGKIVFENAQ
TLTNASGEVMVLGRSMKMIVQDEHGEDRANHKLAYGSKLFVSEGQQVARGDKLYEWDPYT
LPILAEKAGTIKYVDLANGIALREETDEATGMTQKIVIDWRTAPKGSELKPELILVDKDG
EPVRNDLGHPVHYGMSVDAVLSVEDGDEIQAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRVSIEPADESMETVEYMVPKGKHIPVQEGDFIA
KGEYLMDGNPAPHDILAVMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
VLDSGDTTLLKGEHVDKHEFDLACAKADSKGGRAARGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATDRVRNIAQGRDNVVLEARRE
EAEAAAALAAPVMDEDVIGGDVFDNLVETPESRD
NT seq 4245 nt   +upstreamnt  +downstreamnt
atgaaccaggaactgacgaacaacccgttcaatccgctgacaccgcctaaggtgttcgac
gagatcaaagtctcgctggcctcgccagagcggatcctgtcgtggtcgtatggcgaaatc
aaaaagccagaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgc
gcacgtatctttggcccgatcaaagattacgaatgcctgtgcggaaaatataagcgcatg
aaatatcgcggcgttgtctgcgaaaaatgtggtgttgaagttacgcttcagaaagtacgc
cgcgagcgtatgggccacatcgagctggcctcgccagttgcgcacatctggttcctcaag
tcgttgccatcgcgcatcggcctgatgctggatatgactctgcgtgatctggagcgggtt
ctctactttgagaactacgttgtgatcgaacctggtctgaccgatctgacctatggccag
atgatgaccgaagaagagttcatggacgcgcaagatgcctatggcatggatgctttcacc
gccaacatcggcgctgaagcgatccgtgaaatgctggctgcgatcgatctggaatccgaa
gctgaccagctgcgtgccgatctggccgaagccactggtgagttgaagcccaagaagatc
atcaagcgtctgaaagttgttgaatccttcctcgagtcgggcaaccgccctgagtggatg
gttctgaccgtgattccggtaattccgccagaactgcgcccactggtgcctctggatggt
ggtcgtttcgcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccggaacaac
cgtctgaagcgtctgatcgaattgcgcgcacctgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatctgtggatgcgctgttcgacaacggccgtcgtggtcgcgtaatcact
ggcgccaacaagcgtccgctgaaatcgctgtccgacatgctgaagggtaagcaaggtcgc
ttccgtcaaaaccttttgggtaagcgcgtcgacttctcgggtcgttcggtcattgtgact
ggcccggaattgaagctgcaccaatgtggtctgccgaaaaagatggcgctcgaactgttc
aagccgttcatctactcgcgtctcgaggccaagggtctgtcttccactgtgaagcaagcc
aagaagctggttgaaaaagagcgtcccgaagtttgggatatcctggatgaagtgatccgc
gaacaccctgtcatgctgaaccgtgcgccaacactgcaccgtcttggtattcaggcgttt
gaacccacgctgatcgaaggtaaagccatccagctgcacccgctggtctgctcggcgttc
aacgctgactttgatggtgaccagatggcggtccacgttccactgagccttgaggcccag
ctggaagcacgtgttctgatgatgtcgaccaacaacgttctgtcgcctgcaaacggcgcg
ccgatcattgttccgtcgcaggatatgatcctgggtctgtactatgtgaccctggaacgt
gaaggcatgccgggcgaagggtcggtgtttgcatcgctggaggaagtgcagcacgcactg
gacgccaagcaaattcacctgcacaccaagatcaccgcgcgggtcatgcagatcgacgag
gaaggtaacgaagtttacgaacgctttgaaaccactccgggtcgtatgttgctgggcgat
ctattgcccaagaacgccaaggccccattccacctggtcaaccgtctgctgcgtaagaaa
gaagtgcagaccgtcattgacactgtctaccgttactgcggtcagaaagagtcggttatc
ttctgtgaccagatcatgacgatgggcttccgcgaagcgttcaaggccggtatttcgttt
ggtaaagacgacatgctgatcccagacaccaagtggccgctggttaatgaaacccgcgac
atggtgaaggattttgaacagcagtacatggacggcctgatcactcagggtgaaaagtac
aacaaagttgttgatgcctgggccaagtgtaacgacaaagtcaccgaagcgatgatgggc
gccatttcggcctccaaacgcgacgaggctggcgctgaaatggagccgaactcggtttac
atgatggctcactccggtgcgcgtggttcggttactcagatgaaacagctgggcggtatg
cgcggtctgatggccaagccaaacggtgacatcatcgagacaccgatcatctcgaacttt
aaagaaggtctgtccgttctggagtacttcaactccacccacggtgcccgtaagggtctg
tcggatactgctttgaaaacggcgaactcgggttacctgacccgtcgtctggttgatgtg
gcacaggattgtatcgttcgcgatcacgactgcggcactgatatggcgatcactgcggtg
gcggctgtcaatgatggtgaagttgttgcaactctgggcgaacgtgtcctgggtcgtgtt
gcagctgaagacatcaaaaagccaggcaccgacgatgtactggtggcccatggccagctg
atcgacgaacgtatggctgactcgatcgaagaggctggtgttcggtctgctcgtcttcgt
agcccgctgacttgtgaggccgaagaaggcgtctgcgtcatgtgctacggtcgtgacttg
gcgcgcggcaccatggtgaacactggcgaagctgtcggtatcatcgcggcgcagtcgatt
ggtgaacctggtacacagctgacaatgcggaccttccacattggtggtgttgcgcaggct
ggtcagcagtcgttccaggaagcggcagtcgatggtaagatcgtctttgaaaacgcgcag
accctgaccaacgccagtggcgaagtcatggttctgggtcgtagcatgaagatgatcgtc
caggatgagcatggtgaggatcgggccaaccacaagctggcctatggttccaaactgttt
gtatccgaaggtcagcaagtggcccgcggtgacaaactgtacgaatgggatccctacact
ctgccaatccttgctgaaaaggcaggtactattaagtatgtcgatctggcgaacggtatc
gcactgcgcgaagaaaccgatgaagccactggtatgacacagaagatcgtcatcgactgg
cgcactgcccccaagggcagcgagctgaagccggaacttattctggttgataaagatggc
gaacctgtccgcaacgatctgggtcacccagttcactacggtatgtcggttgacgcggtt
ctgtcggtcgaagacggggacgaaatccaggctggtgacgttattgcgcgtatcccgcgt
gaaggcgccaagaccaaggatattaccggtggtctgccacgggttgcggaactgttcgaa
gcacgtcgtcccaaggatcacgcaatcatcgccgaaatcgatggctacgtgcgctttggc
cgcgactacaagaacaagcgtcgcgtctcgatcgagccagcggatgagtcaatggaaacc
gtggaatacatggtgcccaagggcaagcacatcccggttcaagaaggtgactttatcgct
aagggtgaatacctgatggacggtaacccggctccgcacgatattcttgcggttatgggt
gtcgaggcactggctgactatatgatcgacgaagtgcaggatgtgtatcgtctgcagggc
gtgaagatcaacgataagcacatcgaagttatcgtacgtcagatgctgcaaaagtgggaa
gttctggacagcggtgacaccaccctgctcaagggtgaacacgtcgacaagcacgagttc
gatctggcctgtgcaaaagcagactccaaaggtggccgtgcggcccgtggcgagccgatc
ctgcttgggatcaccaaagcttcgttgcagacccgctcgttcatctcggcggcatcgttc
caggaaaccacgcgggttctgaccgaggcttcggtacagggtaagcgcgacaaactggtc
ggtctcaaagagaacgtcatcgttggccgcttgatcccagccggtaccggtggggccacg
gatcgcgtgcgtaacattgctcagggccgcgacaatgtcgttctcgaggcgcgtcgcgaa
gaggctgaagccgctgcagctttggccgctccggtgatggacgaagatgtcattggtggt
gatgtgttcgacaatctggtggaaactccggaaagccgcgattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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