KEGG T02734: CFSAN002050

Salmonella enterica subsp. enterica serovar Cubana: CFSAN002050_12315

Entry

CFSAN002050_12315 CDS       T02734

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

seec Salmonella enterica subsp. enterica serovar Cubana

Pathway

seec03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:seec00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFSAN002050_12315 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:seec03019]
    CFSAN002050_12315 (rne)
   03009 Ribosome biogenesis [BR:seec03009]
    CFSAN002050_12315 (rne)
Enzymes [BR:seec01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CFSAN002050_12315 (rne)
Messenger RNA biogenesis [BR:seec03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CFSAN002050_12315 (rne)
Ribosome biogenesis [BR:seec03009]
Prokaryotic type
  rRNA processing factors
   CFSAN002050_12315 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio PNPase_C S1

Other DBs

NCBI-ProteinID:

AGQ72871

Position

complement(2231274..2234480)

AA seq 1068 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAETRDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVVAEPQVIAATVALEPQASVQAVENVAVEPQT
VAEPQTPEVVKVETTHPEVIAAPVDEQPQLIAESDTPEAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDDHNHASAPMTRA
PAPEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE

NT seq 3207 nt +upstreamnt +downstreamnt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtactgatgccgaataacccgcgcgcgggtggtatttcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtgcgtaccgcaggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaggccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctgatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaaccgcgttc
aataccaacctggaagcggccgatgagattgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgcctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagttaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctgcgtgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccgggtctgtttagccgcttcctaaacgcgctgaaacaactgttc
agcggtgaagaaacgaaagccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacggcagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcggaaacgcgcgatacccgccagcaggaaacg
gcggaaaaagtgaaaaccggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaagcgtcaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
cagcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgtcagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgac
acgccggtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgagctggcgaaagttgatttacctgtcgttgccgatatcgcgccggagcag
gatgatagcgtagaaccgcgcgataataccggtatgccgcgtcgctcccgtcgttctccg
cgccacctgcgcgtaagcggtcagcgtcgccgtcgctatcgtgacgagcgctacccgaca
caatcgccaatgccgttaaccgtcgcctgcgcgtcgccggaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaaccgcaggttatcgctgcgaccgta
gcgttagaaccacaagcgtcggtacaggcggtagaaaacgttgccgttgagccgcagacc
gtcgccgaaccacagacgccggaagtcgtcaaggtcgagacaacgcatccggaagtgatt
gccgcgccggttgatgaacagccgcaactgattgccgaaagcgatacgccggaagcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtggctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagccg
caggacgttgtctgcgttgacgacgatcataatcacgccagcgcgccgatgacgcgtgcg
ccagcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcgcccttccttc
cactttgaaggtaaaggcgcggcaggcggacacagcgctacacgtcatgccagcgccccg
gcgacacgcccacagccggtagaatga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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