KEGG T02736: SEEH1578

Salmonella enterica subsp. enterica serovar Heidelberg 41578: SEEH1578_03675

Entry

SEEH1578_03675    CDS       T02736

Name

(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

seeh Salmonella enterica subsp. enterica serovar Heidelberg 41578

Brite

KEGG Orthology (KO) [BR:seeh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:seeh03016]
    SEEH1578_03675
Enzymes [BR:seeh01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     SEEH1578_03675
Transfer RNA biogenesis [BR:seeh03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    SEEH1578_03675
Prokaryotic type
   tRNA splicing ligases
    SEEH1578_03675

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

AGQ62338

Position

complement(618569..619783)

AA seq 404 aa
MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRDV
GAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG

NT seq 1215 nt +upstreamnt +downstreamnt
atgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcacctg
ggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcgcag
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagataaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggcggtttcggcg
cggcgcggtgagttcggtatcattcctggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacgccctgcggcaggtggtg
tgcgttaaaggatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

Download RDF

DBGET integrated database retrieval system