KEGG   Salmonella enterica subsp. enterica serovar 4,[5],12 i - str. 08-1736: SE451236_22495
Entry
SE451236_22495    CDS       T02738                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
seen  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
Pathway
seen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:seen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SE451236_22495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:seen03019]
    SE451236_22495
   03009 Ribosome biogenesis [BR:seen03009]
    SE451236_22495
Enzymes [BR:seen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SE451236_22495
Messenger RNA biogenesis [BR:seen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SE451236_22495
Ribosome biogenesis [BR:seen03009]
 Prokaryotic type
  rRNA helicases
   SE451236_22495
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_22 DRTGG
Other DBs
NCBI-GeneID: 16389983
NCBI-ProteinID: AGQ87512
Position
complement(4694854..4696743)
AA seq 629 aa
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGD
GRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq 1890 nt   +upstreamnt  +downstreamnt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcgccaacccgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccttgtacggcggtcagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcactta
aaacgcggcaccctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaa
gtagcagaagcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatc
gctaccgacgttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactac
gatattccgatggactccgagtcctacgttcaccgtatcggtcgtaccggccgtgcgggt
cgcgccggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggt
aaacgccgtctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggat
ctcgaaacgctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgatcctg
ccgccggatgcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccg
cgcgatcgtaatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgt
cgtgacgttggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaa
gttcgtcatatcgtgggcgctatcgctaacgaaggcgacatcagcagccgttacattggc
aacattaagctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaa
gtgctccagcacttcacgcgtacccgcattctgaacaagccgatgaatatgcagctgttg
ggtgatgcggttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggc
gaacgtcgtgaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgat
ggtcgtcgcttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctacc
ggtcgccgtcgtttcggcggtgatgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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