KEGG   Salmonella enterica subsp. enterica serovar Typhimurium 798: UMN798_1248
Entry
UMN798_1248       CDS       T01782                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
sef  Salmonella enterica subsp. enterica serovar Typhimurium 798
Pathway
sef03030  DNA replication
sef03430  Mismatch repair
sef03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sef00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    UMN798_1248 (holB)
   03430 Mismatch repair
    UMN798_1248 (holB)
   03440 Homologous recombination
    UMN798_1248 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sef03032]
    UMN798_1248 (holB)
   03400 DNA repair and recombination proteins [BR:sef03400]
    UMN798_1248 (holB)
Enzymes [BR:sef01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     UMN798_1248 (holB)
DNA replication proteins [BR:sef03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     UMN798_1248 (holB)
DNA repair and recombination proteins [BR:sef03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     UMN798_1248 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNApol3-delta_C HolB_lid EPF DUF6869
Other DBs
NCBI-ProteinID: AFD58147
Position
1240477..1241481
AA seq 334 aa
MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCG
HCRGCQLMQAGTHPDYYTLTPDKGKISLGVDAVREVSEKLYEHSRLGGAKVVWIADAALL
TDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWLSREV
TASQEALLTALRLNAGSPGAALALLQSERWAQREALCQALMDSLHTGDWYAVLTALNHEQ
APARLHWLATLLVDALKRQHGASYLTNVDADAVVAALAGPLSPARIQAILNDVCHCRDQL
LHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgaaatggtatccatggttacggcccgcctatgaaaaactggtagaaagttaccaggcg
ggacgtgggcaccatgcgctactgattcaggccttacctggcatgggcgacgaggcgctg
tgctatgcgctgagccgttatctgttatgccagcagcctgagggccacaaaagctgtggg
cattgccgtggctgtcagcttatgcaggctggcacgcatccggactattacacgctgacg
ccggataaaggcaaaatcagcctcggcgtagatgcggtacgcgaggtcagcgagaaattg
tacgagcactcccgtctgggcggcgcgaaggtggtgtggattgcggatgcggcgctatta
accgacgccgccgccaatgcgttgctcaaaacgctggaagagccgccggagcaaacctgg
tttttccttgccagcccggagcctgctcgtctgttggcgacattacgcagccgctgccgg
ctgcatcatctggcgccgccgtccgaatcgtatgcgatgtcatggctgtcgcgagaagtg
acggcgtcacaagaagcattgctcacggcgctacgtctgaatgcggggtcgcccggcgcc
gcgctggcgctgttgcagtctgaacgctgggcgcagcgtgaggcgctgtgtcaggcgtta
atggacagtttgcatacgggcgactggtatgcggtattaacggcgctcaatcatgagcaa
gccccggcgcgcctgcactggctggcgacgctgctggtagacgcgctgaaacgtcagcac
ggcgcgtcgtacctgacaaacgttgatgcggacgcggttgttgccgcgctggcggggccg
ctatccccggcgcgtattcaggcaatcctgaacgatgtttgccattgtcgtgatcaatta
cttcatgtgaccggattaaaccgcgaactggtattaaccgatctcattctccgcatcgag
cattacctgcaaccaggcaccttgttgcctgttcctcatctttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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