KEGG   Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_3001
Entry
SPC_3001          CDS       T00862                                 
Symbol
ygcF
Name
(GenBank) hypothetical protein
  KO
K10026  7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
Organism
sei  Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei00790  Folate biosynthesis
sei01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:sei00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00790 Folate biosynthesis
    SPC_3001 (ygcF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sei03016]
    SPC_3001 (ygcF)
Enzymes [BR:sei01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.99  Other carbon-nitrogen lyases
    4.3.99.3  7-carboxy-7-deazaguanine synthase
     SPC_3001 (ygcF)
Transfer RNA biogenesis [BR:sei03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    SPC_3001 (ygcF)
SSDB
Motif
Pfam: Radical_SAM Fer4_12 DUF5701
Other DBs
NCBI-ProteinID: ACN47092
UniProt: C0PXD4
Position
complement(3029555..3030226)
AA seq 223 aa
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAK
TKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETS
GTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD
DKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
NT seq 672 nt   +upstreamnt  +downstreamnt
atgcagtacccgattaacgagatgttccagaccctacaaggcgagggttattttaccggc
gtccccgctatttttattcgtttacagggatgtccggtcggctgtgcctggtgcgatacc
aaacacacctgggataaactgagcgatcgggaagtgtctctgttcagcattctggcaaaa
accaaagagagcgacaaatggggtgctgcgagcagtgaagacttgctggcagtaattaat
cgtcagggctataccgcgcgtcacgttgtcatcaccggtggagaaccctgtattcacgac
ctcatgccgctcaccgatctgcttgaaaagagtggttttagttgtcagattgagaccagc
gggacgcacgaagtgcgctgtacgcctaacacctgggtcacggtttcaccaaaagtgaat
atgcgcgggggatatgacgtgctttcccaggcgctggagcgcgccaatgaaatcaagcat
cccgttgggcgagttcgtgatattgaggcgctggatgaactgttagccacgttgagcgat
gataaaccgcgcgtgattgctttgcagcccattagccagaaagaagacgcgacgcgtctg
tgtattgaaacgtgtattgcacgtaactggcggctgtctatgcaaacgcataaatattta
aatattgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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