KEGG T03731: AU38

Salmonella enterica subsp. enterica serovar Enteritidis EC20090135: AU38_16555

Entry

AU38_16555        CDS       T03731

Name

(GenBank) DNA-directed RNA polymerase subunit alpha

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

sena Salmonella enterica subsp. enterica serovar Enteritidis EC20090135

Pathway

sena03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:sena00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AU38_16555
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sena03021]
    AU38_16555
   03400 DNA repair and recombination proteins [BR:sena03400]
    AU38_16555
Enzymes [BR:sena01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AU38_16555
Transcription machinery [BR:sena03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AU38_16555
DNA repair and recombination proteins [BR:sena03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AU38_16555

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2

Other DBs

NCBI-ProteinID:

AHP71144

Position

complement(3465191..3466180)

AA seq 329 aa
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE

NT seq 990 nt +upstreamnt +downstreamnt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtgagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggcttcggccatactctgggt
aacgcactgcgccgtattctgctctcatcgatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactacatgagtacagcaccaaagaaggcgttcaggaagacatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagttattctt
accttgaataaatctggcattggccctgtgactgcagccgatatcacccatgatggggat
gtcgaaatcgtcaagccgcagcacgtgatctgccacctgaccgatgaaaacgcgtctatt
agtatgcgtatcaaagttcagcgcggtcgtggttatgtgccggcttctacccgaattcat
tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcctgctacagccctgta
gagcgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag
ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg
gcaaccatcctggctgaacaactggaagctttcgttgatttacgtgatgtacgtcaaccg
gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgcctcaaggcagaagctatccactatatcggtgat
ctggtacagcgtaccgaggttgagcttcttaagacgcctaacctgggtaaaaaatctctt
accgagattaaagacgtgctggcttcccgtggactgtctctgggtatgcgcctagaaaac
tggccaccggcaagcatcgctgacgagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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