KEGG T03731: AU38

Salmonella enterica subsp. enterica serovar Enteritidis EC20090135: AU38_17065

Entry

AU38_17065        CDS       T03731

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

sena Salmonella enterica subsp. enterica serovar Enteritidis EC20090135

Brite

KEGG Orthology (KO) [BR:sena00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sena03016]
    AU38_17065
Enzymes [BR:sena01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     AU38_17065
Transfer RNA biogenesis [BR:sena03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    AU38_17065
Prokaryotic type
   tRNA splicing ligases
    AU38_17065

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

AHP71243

Position

complement(3562407..3563621)

AA seq 404 aa
MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRDV
GAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKSIVLDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYTLRQVVCVKG

NT seq 1215 nt +upstreamnt +downstreamnt
atgaattacgaattgatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcacctg
ggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgatgattacctgaaagcggtacactgggcgcag
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaatcgatcgtcctcgatatggacgagatcaactgccaccataactatgtg
caaaaagaacagcactttggcgaagagatttatgtgacgcgtaaaggagcggtttcggcg
cggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagacattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacaccctgcggcaggtggtg
tgcgttaaaggatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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