KEGG   Salmonella enterica subsp. enterica serovar Typhimurium DT104: DT104_32751
Entry
DT104_32751       CDS       T02874                                 
Name
(GenBank) ATP-dependent RNA helicase (dead-box protein)
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
send  Salmonella enterica subsp. enterica serovar Typhimurium DT104
Pathway
send03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:send00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DT104_32751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:send03019]
    DT104_32751
   03009 Ribosome biogenesis [BR:send03009]
    DT104_32751
Enzymes [BR:send01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     DT104_32751
Messenger RNA biogenesis [BR:send03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DT104_32751
Ribosome biogenesis [BR:send03009]
 Prokaryotic type
  rRNA helicases
   DT104_32751
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_22 DRTGG
Other DBs
NCBI-ProteinID: CCW75974
Position
complement(3479445..3481385)
AA seq 646 aa
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKIQPSAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREERPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcccttaccgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcgccaacc
cgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccttgtacggcggtcagcgttatgacgtgcagttacgcgccctgcgt
caggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcacttaaaacgcggc
accctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaaatgctgcgt
atgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggtcatcagacc
gctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctggaagcggaa
gactttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaagtagcagaa
gcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaaccaggcgctg
cgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatcgctaccgac
gttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactacgatattccg
atggactccgagtcctacgttcaccgtatcggtcgtaccggccgtgcgggtcgcgccggt
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggtaaacgccgt
ctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctggatcagtac
cgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggatctcgaaacg
ctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgatcctgccgccggat
gcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccgcgcgatcgt
aatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaagttcgtcat
atcgtgggcgctatcgctaacgaaggcgacatcagcagccgttacattggcaacattaag
ctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaagtgctccag
cacttcacgcgtacccgcattctgaacaagccgatgaatatgcagctgttgggtgatgcg
gttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggcgaacgtcgt
gaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgatggtcgtcgc
ttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctaccggtcgccgt
cgtttcggcggtgatgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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