KEGG   Salmonella enterica subsp. enterica serovar Thompson: IA1_19035
Entry
IA1_19035         CDS       T02868                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sene  Salmonella enterica subsp. enterica serovar Thompson
Pathway
sene03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sene00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IA1_19035 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sene03021]
    IA1_19035 (rho)
   03019 Messenger RNA biogenesis [BR:sene03019]
    IA1_19035 (rho)
Transcription machinery [BR:sene03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IA1_19035 (rho)
Messenger RNA biogenesis [BR:sene03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IA1_19035 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: AGX12358
Position
3978828..3980087
AA seq 419 aa
MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaagt
atggggctggaaaacctggcccgtatgcgcaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatattgcaggat
ggatttggtttcctccgttctgcagacagctcctacctcgccggtcctgatgatatctac
gtttcccccagccaaatccgccgtttcaacctccgcactggtgataccatttctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgttgaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgtaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggagcgtggtaacggttctaccgaagacttaacggcgcgc
gttctggatctggcttcgccgatcggtcgcggccagcgcggtctgattgtcgcgccgccg
aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcgtataaccaccca
gactgcgtgctgatggtgttgctgatcgacgaacgtccggaagaagtaaccgagatgcag
cgtctggtgaaaggcgaagtggttgcgtctacctttgacgaaccggcatcccgccacgtt
caggttgccgaaatggttatcgagaaggcgaaacgtctggttgaacacaagaaagacgtt
atcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtggtgccggcg
tccggtaaagtactgaccggtggtgtggacgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgtggaagagggcggtagcctgactatcatcgcgacggcgcta
atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggcaccggtaac
atggagctgcatctctcgcgtaagatcgctgaaaaacgtgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg
tggatcctgcgtaaaatcatccatccgatgggtgaaattgacgcgatggaattcctcatt
aacaaactggcgatgaccaaaactaatgacgactttttcgagatgatgaagcgctcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system