KEGG   Sodalis endosymbiont of Henestaris halophilus: HBA_0529
Entry
HBA_0529          CDS       T05311                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
seny  Sodalis endosymbiont of Henestaris halophilus
Pathway
seny03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:seny00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HBA_0529 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:seny03021]
    HBA_0529 (rpoC)
   03400 DNA repair and recombination proteins [BR:seny03400]
    HBA_0529 (rpoC)
Enzymes [BR:seny01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HBA_0529 (rpoC)
Transcription machinery [BR:seny03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HBA_0529 (rpoC)
DNA repair and recombination proteins [BR:seny03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HBA_0529 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: SNC58775
UniProt: A0A2C8CWZ6
Position
I:895297..899517
AA seq 1406 aa
MKNSLKFLKAQTKTEEFDAIKIALASPDIIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDIPLRDIERVLYFESYVVVECGMTTLERSQILTEEQYLDALEEFGDEFEANI
GAEGIQALLKNMDLEQECKQLRNELQGTSSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRTITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRCLATTIKAAKKMVEREEGIVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERIYCTG
LAELHTRVKVRITEHEKCDNGEWMSNTYLADTTVGRAILWMIVPKGLPFSLVNQTLGKKA
ISKMLNTCYRVLGLKSTVIFADHIMYTGFAYAARSGSSVCIDDMVIPDKKAEIIDEAAVE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLSTEAVINRDGEEERQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCDTFSGILMTPVIEGGDVKEPLRECVL
GRVTAEDVLKHGTSDILVKRNTLLNEQWCDVLEEHSVDSVKVRSVVTCDTDFGVCANCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVQNKGTIYL
NNAKFVVNGSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMARGDGAEILGGEIVANW
DPHTMPIITEVDGFVRFIDMIDGQTITRQTDELTGLSSIVILDTAERTGSGKDLRPALRI
VDANGNDVLMPMTDMPAQYFLPGKTIVQLEDGAKITSGDTLARLPQETSVTKDITGGLPR
VADLFEARRPKEPAILAEISGIVTFGKETKGKRRLVISPVDGSDSYEEMIPKWRQLNVLE
GERVECGDVISDGPESPHDILRLRGVHAMTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIINSGSSEFLKGEQVEYSRIKIANRQLKNNGKVEITYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQKRLRHRQHDGELA
TPQITADEASANLADLLNAGLGANND
NT seq 4221 nt   +upstreamnt  +downstreamnt
gtgaaaaattcacttaagtttttaaaagcgcaaactaaaaccgaagagtttgatgcgatc
aagatagcactagcttctccagacattattcgttcttggtctttcggtgaagtaaaaaag
ccggaaaccattaactaccgtacctttaaaccggagcgtgacggtttgttttgcgcccgt
atttttggaccggtaaaagattatgaatgcttatgcggtaagtacaagcgtttaaaacac
cgtggcgtaatctgtgagaagtgcggtgttgaagtgactcagactaaggtgcgtcgtgag
cgtatgggccatatcgaattggcttcacctactgcccacatttggtttttaaaatcgttg
ccatctcgtatcggattgctgctagatataccgttgcgtgatatcgaacgcgtattatat
tttgaatcctatgtagtagttgaatgcggtatgactacacttgagcgcagtcagatcctg
actgaagagcaatatttggatgctctggaagagtttggtgacgaatttgaggctaatata
ggagccgaagggatccaagcccttttaaaaaacatggacttggagcaggaatgtaagcaa
ctacgcaacgaattacaaggaaccagttctgaaaccaagcgtaaaaagctgactaaacgc
atcaagttactggaagcttttgtgcaaagtggcaataaaccagagtggatgatcttgaca
gtattaccggtattaccgccagatctgcgtccactggttccactggacggtggccgtttt
gcaacgtcagatctgaacgatctgtatcgccgcgtaatcaaccgtaataaccgtttgaag
cgtctgctggatctggctgctccagatatcatcgtacgtaacgaaaagcgtatgctacaa
gaagcagttgacgcgttgctagataatggccgccgcggtcgcactattactggttctaat
aagcgcccgcttaaatcgctggccgacatgataaaaggcaagcaaggacggtttcgtcag
aatttgctgggtaaacgcgtcgattattctggtcgttcggttattactgtcggtccgtat
ctacgtttgcatcagtgtggtttacctaaaaaaatggcgttagagctattcaaaccgttt
atttacggcaagcttgagctacgctgtcttgccacaacgatcaaagccgctaaaaaaatg
gtggaacgagaagaaggaatagtttgggatattctggacgaggttatccgtgaacatccg
gtcatgctaaatcgtgctccgactctgcaccgtcttggtatccaagcttttgagccggtg
ctcattgaaggtaaagccattcagctgcacccgctggtgtgtgctgcatataacgctgac
ttcgatggcgatcaaatggcagtacatgttccgcttacgctagaagcccaattggaagca
agggctttgatgatgtcgaccaataacatcttgtccccggctaacggggaacctattata
gttccatcgcaggatgtagtattgggtctatactatatgacccgcgatcgtgtcaacggt
aaaggcgaaggtatggtgctgaccggaccgaaagaagcggaacgcatttactgcaccggt
ttggccgagttgcatacgcgcgttaaagtgcgaatcaccgagcatgagaaatgtgacaat
ggcgagtggatgagcaatacctatctggcggacaccactgttggtcgtgccatactgtgg
atgattgtgccgaagggtttgccgttctcgctggtgaaccagacgttgggtaaaaaagcc
atctctaaaatgcttaatacctgttatcgtgtgctaggtctgaaatctacagtcattttt
gccgatcacattatgtacacgggtttcgcttatgctgctcgttctggttcgtctgtttgt
atcgatgatatggtaattccggataaaaaagccgaaattatcgatgaagccgcagttgaa
gtagccgaaatacaagagcagttccaatcagggctagttactgccggcgaacgatataac
aaggttattgatatctgggctgcagcgaacgaacgagtctctaaggcaatgatggataat
ctttccaccgaagcggtcattaaccgcgatggagaggaagagcgtcaagtatcgtttaat
aacatctttatgatggctgattctggcgctcgtggttcggcggcgcaaattcgtcaacta
gccggtatgcgaggtttgatggctaaacctgatggctcgatcattgaaacacctattact
gcaaacttccgtgaaggtcttaatgtacttcagtactttatctccactcacggtgctcgt
aaaggattggcagataccgctttgaaaaccgcgaattccggttatctaacccggcgcttg
gtcgacgtggcgcaagatcttgtggttactgaagacgattgcgatacattctccggtatc
ttaatgactcctgttatagagggtggtgatgtaaaagagcccctgcgtgagtgcgtgcta
ggccgcgtcactgcggaagatgtcctaaagcatggaacctcggatattttagttaagcgt
aacaccttgttgaacgagcaatggtgtgacgttcttgaagaacactccgtagacagtgtg
aaagtacgttcggttgtaacctgtgacactgattttggtgtgtgtgctaactgctatggt
cgtgatttagctcgtgggcatttagtaaacaagggagaagccatcggtgttattgccgcg
cagtctattggcgagcctggtacacagttaactatgcgtacattccatattggtggagca
gcgtcccgtgcagctgcggaatccagcattcaggtgcagaataaagggactatctatctt
aacaatgctaagtttgtggtgaatggaagcggtaagctagtgattacctcgcgtaacact
gagctaaagcttattgacgaattcggccgtaccaaagaaagctataaagtgccttatgga
tccgttatggcaagaggcgatggcgcggaaatactagggggcgaaattgttgctaattgg
gatccgcatactatgccaattatcactgaagtagacggttttgttcgctttatcgatatg
atagatgggcaaaccattacgcgccagactgacgaattaactggtttgtcctctatcgtg
attctggataccgccgaacgtactggtagcggtaaagatttgcgtccagcactgcgaatt
gtggatgccaatggcaatgatgtgctgatgcctatgaccgatatgcccgcacagtacttc
ctaccaggtaaaactattgtccagttggaagacggtgccaaaatcaccagcggggatacg
ttagcacgtttgccacaggaaactagtgtaacgaaagatattaccggtggtctgccgcgc
gttgctgatttgtttgaagctcgccgcccaaaagagccagcgattttggccgaaattagt
ggtatagttacctttggtaaagaaactaaaggtaagcgccgcttagttatttcgcctgtt
gacggtagcgattcttacgaagagatgattccaaaatggcgtcagctaaacgtgcttgaa
ggcgaacgcgtagaatgcggtgatgtaatttctgatggtccggaatcaccgcacgatatt
ttgcgtttgcgtggcgtgcatgcgatgactcgctatattgtcaacgaagtccaggatgtc
tatcgtctgcaaggagtgaaaatcaacgacaaacacatcgaagtgatcgttcgtcagatg
ttgcgtaaagcaacaattattaatagcggtagctcagagtttttaaaaggtgaacaggta
gaatactctcgtatcaagatagccaaccgtcaattaaaaaacaacggcaaagtagaaata
acctacatgcgcgatctgctaggtataactaaagcctcgttagctacggaatcttttatt
tctgcggcatcgttccaggaaaccacgcgcgtgcttaccgaagccgccgttgccggtaaa
cgagatgaactacgcggcttgaaagaaaacgtgattgttggacgattaattcccgctggt
actggttatgcttatcatcaaaaacgcttacgtcatcgtcagcatgatggggaactagcc
acaccacagattaccgccgatgaagcttccgcaaatttggctgatctgctgaacgcaggt
ttgggtgctaataacgattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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