KEGG   Staphylococcus epidermidis SEI: DP17_533
Entry
DP17_533          CDS       T03343                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
seps  Staphylococcus epidermidis SEI
Pathway
seps03030  DNA replication
seps03410  Base excision repair
seps03420  Nucleotide excision repair
seps03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:seps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DP17_533 (ligA)
   03410 Base excision repair
    DP17_533 (ligA)
   03420 Nucleotide excision repair
    DP17_533 (ligA)
   03430 Mismatch repair
    DP17_533 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:seps03032]
    DP17_533 (ligA)
   03400 DNA repair and recombination proteins [BR:seps03400]
    DP17_533 (ligA)
Enzymes [BR:seps01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DP17_533 (ligA)
DNA replication proteins [BR:seps03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DP17_533 (ligA)
DNA repair and recombination proteins [BR:seps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DP17_533 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DP17_533 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DP17_533 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DP17_533 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 zf-NADH-PPase RNA_pol_A_CTD PTCB-BRCT zf-IS66 A24_N_bact
Other DBs
NCBI-ProteinID: AIR82705
Position
complement(558341..560338)
AA seq 665 aa
MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV
RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGKVEYMCELKIDGLAVSL
KYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRRSFIHLNN
EKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNATTQSEALEELD
QLGFKTNQERERVSDIEGVLNYIEKWTSKRGSLSYDIDGIVIKVNDLSQQEEMGYTQKSP
RWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHER
DIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLIEGLIHFVSRQAMNIDGLGTKIIHQLYENQLIKDVADIFYLKEEDLLPLERM
GKKKVDNLLLAIEKSKEQSLEHLLFGLGIRHLGVKASQVLAERYETMDQLFKVTESELIE
IQDIGDKLAQSVVTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIEGHPDFSGKTIVLTG
KLEQMTRNEASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE
KQNGI
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgcaagatgttaaaaagcgtgtggaaaaattacatgacttattgaatcaatatagttat
gaatattatgtacaagataatccctcagtgcctgacagtgagtatgataagttattacat
gagctgattgaaattgaagaaaaatatccagaattcaaatcgacagactctccaacagtg
cgtgtgggtggcgaagctcagtcttcttttgaaaaagtaaatcacgacacgcctatgtta
agtttaggtaatgcttttaatgaagaagatttaagaaaatttgatcaacgtattcgtgat
agtattggtaaggtcgaatacatgtgtgaacttaaaatagatggtttggctgtttcgctc
aaatatgaaaatggtcgttttgttcaaggacttacacgtggtgatggtacgacaggtgag
gatatcactgaaaatctaagaactatacatgctataccactaaaaattaaagaacctctc
aattttgaggtccgtggggaagcttatatgccacgtcgttcattcattcatttgaataat
gaaaaagaacaaaatggtgaacaaccttttgcaaatccacgaaacgctgctgcaggctct
ttaagacaacttgactctaaactagctgcgaaaagaaagttaagcgtcttcttatatagt
gtgaatgacctaaccgagtttaatgcaacaacacaaagtgaagcgctagaggaattggac
caattaggttttaaaactaaccaagaacgtgaacgagtatcagatattgagggcgtactt
aattatatagagaaatggacaagcaaaagaggatctttatcttacgatattgatggtatt
gttataaaagttaacgatttatctcaacaagaggaaatgggttatacgcaaaaatctcca
agatgggcgattgcttataaatttccagctgaagaagttattacaaaattattggatatt
gagctaagtattgggcgtacgggtgttgtgacaccaactgcaattctagaacctgtaaaa
gtagctggtactacagtttcaagagcctcacttcataatgaagatttaatacatgaaaga
gatatacgtatcggagatagtgttgttattaaaaaagccggggacatcatccctgaagtt
gtaaaaagtattttagatagacgacctaacgaatcggaaatttatcatatgccaacacat
tgtcctagttgtggacatgaattagttcgtattgaaggagaagttgctttacgttgtatt
aatccaaaatgtcaggcacagcttattgaaggacttatacatttcgtttcaagacaagcg
atgaatatagatggtttaggtactaaaattattcatcagctatacgaaaatcagttaatc
aaagatgtcgcagatattttctatttgaaagaagaagatttattaccattagagagaatg
ggaaagaagaaagttgataatcttttattagcgatagaaaaatctaaagaacagtcatta
gagcatttattatttggactgggtattagacatttaggtgtaaaagctagtcaagtactt
gctgagcgatatgaaacgatggatcaactttttaaagtaactgaaagtgaattaattgaa
attcaagatattggagataaacttgcacaatctgttgtaacatatctcgaaaatagtgat
attcgttcattaattgaaaaattaagtaataaaaatgttaatatgtcttataaaggaatt
aaaacaactgaaatcgaaggtcatcctgattttagtgggaaaacaattgtattaacaggg
aaactcgagcaaatgacgagaaatgaagcatctgaatggttgaaaatgcaaggtgctaaa
gttacaaacagcgtgactaaaagtactgatattgtcatagctggagcagatgcagggtct
aaattagccaaagctgagaagtatggtactgaaatttggactgaagcagcatttattgaa
aaacaaaatggaatctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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