KEGG   Prodigiosinella confusarubida ATCC 39006: Ser39006_004335
Entry
Ser39006_004335   CDS       T05290                                 
Name
(GenBank) pectate lyase
  KO
K01728  pectate lyase [EC:4.2.2.2]
Organism
sera  Prodigiosinella confusarubida ATCC 39006
Pathway
sera00040  Pentose and glucuronate interconversions
sera01100  Metabolic pathways
sera02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:sera00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    Ser39006_004335
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Ser39006_004335
Enzymes [BR:sera01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.2  pectate lyase
     Ser39006_004335
SSDB
Motif
Pfam: Pectate_lyase_4 Beta_helix
Other DBs
NCBI-ProteinID: AUH03428
UniProt: A0A2I5TFU6
Position
complement(948403..949539)
AA seq 378 aa
MKALLKPITAGLLLALCQPVFAASTATGGYATTAGGNVTGAVSKTASSMQDIIDIIADAR
YDSAGKKVKTGAYPLIITYTGNEDSLINAAAANICAQSAKDARGVEIKEFTKGITIIGAN
GSSANFGIWITKSSDVVVQNMRIGYLPGGASDGDMIRIDRSPNVWIDHNELFAANHECDG
SKDGDTTFESAVDIKKDSTYVTVSYNYIHGVKKVGLAGFSSSDTAERNITYHHNVYNDVT
SRLPLQRGGLVHAYNNLYTNVTSSGLNVRQNGNALVESNWFEDVLNPVTSRYDGSNFGKW
ELRNNNITKPADFTTYNITWTADTKPYVNADNWTTTGAYPSSIPYSYSPVSAQCVKNKLA
NYAGVSKNLATLTSSACN
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgaaagcattactgaaacctataactgcggggctgttgttggcattatgtcaacccgtc
tttgccgcaagtacagcaaccggtggttatgccaccaccgcgggcggtaacgttaccggt
gcagtcagtaaaacggcatcatccatgcaagatattatcgatatcattgctgacgcccga
tacgactccgctggcaagaaagtcaaaaccggtgcctatccgctgatcatcacttacacc
ggtaacgaggactcgctgatcaatgccgctgccgccaacatttgcgcccagtcagcaaaa
gatgcccgtggggtggaaatcaaggagttcaccaaaggcatcactatcatcggtgccaat
ggttcttccgccaacttcgggatctggattacaaaatcctccgacgtagtggtacagaac
atgcgtatcggttatctgccaggcggggccagtgacggcgatatgatccgcattgataga
tcccctaatgtgtggattgaccacaacgaactgtttgctgccaatcatgaatgtgatggc
agtaaagacggcgatacaacctttgaatcggctgtggatatcaaaaaagactcaacctac
gttaccgtgtcttacaactacatccatggtgtgaagaaagtgggtctggcaggattcagc
tcgtcagatacggcagagcgcaacatcacttatcatcacaatgtttacaacgatgtcacc
tcccgcctgccgctacaacgtggcggtctggttcatgcctacaacaacctgtacaccaat
gtcaccagttctggcctgaacgtgcgccagaatgggaacgcattagtcgaaagcaactgg
tttgaagatgtgttgaacccggtgacctcccgttacgatggttccaatttcggtaagtgg
gaactgcgtaacaacaacattaccaaacctgccgacttcactacctacaacattacctgg
actgccgataccaagccttatgtaaacgcagacaactggaccaccaccggggcttacccg
tccagtattccttacagctacagcccggtcagtgcccagtgcgtaaaaaacaaactggct
aactatgctggcgtcagtaagaacctggcaaccttgaccagttcagcctgtaactaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (2)   
   KEGG COMPOUND (2)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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