KEGG   Prodigiosinella confusarubida ATCC 39006: Ser39006_005565
Entry
Ser39006_005565   CDS       T05290                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sera  Prodigiosinella confusarubida ATCC 39006
Pathway
sera02024  Quorum sensing
sera03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sera00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ser39006_005565
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Ser39006_005565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sera03019]
    Ser39006_005565
   03036 Chromosome and associated proteins [BR:sera03036]
    Ser39006_005565
Messenger RNA biogenesis [BR:sera03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Ser39006_005565
Chromosome and associated proteins [BR:sera03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Ser39006_005565
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AUH03643
UniProt: A0A2I5TGF0
Position
1193170..1193487
AA seq 105 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPGTSSNPGTNNYHGSNPAGQQQPQQDSDDAE
NT seq 318 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcttgaacgcattgcgtcgcgaacgtgtt
ccggtttcgatctatttggtgaatggtatcaagttgcaaggtcagattgagtcttttgac
cagtttgtcattttgttgaaaaatacggttagccagatggtgtataagcacgccatttcc
acggtggtcccatcccgtccggtgtcgcaccatagtaataccccaggtactagtagtaat
cctggtactaacaactatcatggtagtaatcctgctggtcagcaacagccgcaacaggat
agcgatgacgctgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system