KEGG   Serratia sp. MYb239: CLM71_03445
Entry
CLM71_03445       CDS       T05477                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
serm  Serratia sp. MYb239
Pathway
serm00300  Lysine biosynthesis
serm00550  Peptidoglycan biosynthesis
serm01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:serm00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    CLM71_03445
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    CLM71_03445
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:serm01011]
    CLM71_03445
Enzymes [BR:serm01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     CLM71_03445
Peptidoglycan biosynthesis and degradation proteins [BR:serm01011]
 Precursor biosynthesis
  Amino acid ligase
   CLM71_03445
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase
Other DBs
NCBI-ProteinID: AVJ16253
Position
744296..745783
AA seq 495 aa
MADRNLRDLLAPWVPSAPERALREMILDSRIAAAGDLFVAVNGHQTDGRRYIPQAIAQGV
AAVIAEAEGAAEDGEIRTMHGVPVIYLGQLNQRLSALAGRFYHQPAERLRLVGVTGTNGK
TTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDVQHVLNDLADRGATLA
AMEVSSHGLVQSRVAALPFAAAVFTNLSRDHLDYHGDMASYEAAKWSLFAEHQVGQAIIN
ADDEVGQRWLAQLPDAVAVTMQDNLQPGCHGRWLKATSVDYHDNGATIRFSSSWGDGEIE
SRLMGAFNVSNLLLALATLLSLGYPLAALVASAQQLQPVCGRMEVFNAPGKPTVVVDYAH
TPDALEKALEAARLHCRGQLWCVFGCGGDRDKGKRPLMGAIAEQFADRVVITDDNPRTEE
PQAIIADILSGLLDAGRAQVIHGRAEAVTSSVMQAKEQDVVLVAGKGHEDYQLVGNRRLD
YSDRTTVARLLGVLA
NT seq 1488 nt   +upstreamnt  +downstreamnt
gtggcagatcgtaatttgcgcgacctactcgctccgtgggtgccttcggcccccgagcgc
gcgctgcgggaaatgatattagacagccggattgcggctgccggggatctgtttgtcgcc
gtaaacggccaccagacggatggtcgccgctatattccgcaagccatcgcccagggcgtc
gccgcagtgatcgcagaagctgaaggcgccgccgaagacggtgaaattcgtacgatgcac
ggtgtgccggtgatttacctcggccagttgaatcagcgcctgtctgcgctggccgggcgt
ttttaccatcagccggcagaacgcctgcgtctggtcggcgtgaccggtaccaacggtaaa
accaccaccacccagctgctggcgcagtgggggcagctgctgggcgaaaccagcgcggtg
atgggcaccgtcggcaacggcctgctgggccaggtgtgcccgacagaaaataccaccggt
tcggcggtggatgtgcaacatgtattaaatgacctggcggatcgcggcgcgacgctggcg
gcgatggaagtctcttcccatggtctggtgcaaagccgcgttgcggcgctgccgtttgcc
gcggcggtgttcaccaacctgagccgcgaccacctggattaccacggcgacatggccagc
tatgaagcggcgaaatggtcgctgttcgccgagcaccaggtcggccaggcgattatcaat
gctgatgatgaagtcggtcagcgctggctggcgcagctgccggatgcggtggctgtcacc
atgcaggataacctgcagccgggctgccacggccgctggctgaaggccacctcggtggac
tatcacgataacggcgccactatccgtttcagctccagctggggggatggcgagattgaa
agccgtctgatgggggcatttaacgtcagcaacctgctgctggcgctggcgacgctgctg
tcgctgggctatccgctggcggcgctggtggccagcgcgcagcaactgcagccggtctgt
ggccgcatggaagtgttcaatgcgccgggcaagccgacggtcgtggtcgattacgcccac
acgccggacgcgctggaaaaagcgctggaagccgcgcgtctgcactgccgcgggcagctg
tggtgcgtctttggctgcggcggtgaccgcgacaaaggcaagcgcccgctgatgggcgcg
attgccgagcagtttgccgaccgggtggtgatcaccgatgacaacccgcgtaccgaagag
ccgcaggcgattatcgccgatatcctgagcggtctgctggacgccggccgggcgcaggtg
attcacgggcgtgccgaggcggtaaccagctcggtgatgcaggcgaaagaacaagacgtg
gtgctggtggccggtaaaggtcatgaggattatcaactggtgggcaatcgccgtctggat
tattccgaccgcaccaccgtcgcgcgtttgctgggggtgctggcatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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