KEGG   Serratia sp. MYb239: CLM71_03655
Entry
CLM71_03655       CDS       T05477                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
serm  Serratia sp. MYb239
Brite
KEGG Orthology (KO) [BR:serm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:serm03009]
    CLM71_03655
Enzymes [BR:serm01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     CLM71_03655
Ribosome biogenesis [BR:serm03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CLM71_03655
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT RrnaAD Cons_hypoth95 MTS Met_10 Methyltransf_11 FtsJ CMAS MetW DHDPS Methyltransf_23 DOT1 Methyltransf_15
Other DBs
NCBI-ProteinID: AVJ16295
Position
793398..794726
AA seq 442 aa
MAQFYSPKRRVTTRQNTQIFTVTVSDLDPFGQGVARHNGKAVFIPDVLPGEQAEIQLTED
KRQFAKGKLKRLLSRSPQRVEPRCPHFGVCGGCQQQHADESLQQQSKAAALERMIARETG
VSVPQEAVIAGPQYGYRRRARLGLMWQPKRQTLQMGFRQAGSSELVSVTQCPVLAPELER
LLTPLRACLSGLQAVKRLGHAELVLADNGPLLVLRHLDALRPADREALLTFARQNAVTIY
LASDSEQLEKLCGDTPYYQVDGLRLDFSPRDFIQVNDAVNQQMVAQALEWLEIQPDDRVL
DLFCGMGNFTLPLARRAKAVVGIEGVATLVANGQYNAHKNLLSNASFFHQNLEEDVERQP
WAQQGFDKVMLDPARAGAAGVMSHIVKLAPERVVYVSCNPTTLARDSKTLLSAGYRLARV
RMLDMFPHTGHLESMALFIRQE
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctcccaaacgccgcgtgacgacccggcagaacacacaaatcttc
accgtgacggtgagcgacctcgatcccttcggtcagggtgtggcgcgccacaacggtaaa
gcggtgtttatcccggacgtactgccgggcgaacaggcggaaattcagctgacggaagac
aagcgtcagttcgccaaaggcaagctgaaacgcctgctgagccgcagcccgcagcgggtg
gagccgcgctgtccgcactttggcgtctgcggcggctgtcagcagcagcatgcggatgaa
agcctgcagcagcagagcaaggcagcggcgctggaacggatgatcgcccgcgaaaccggc
gtcagcgtgccgcaggaggcggtgatcgccgggccgcaatacggctatcgccggcgcgcg
cgtctggggctgatgtggcagccgaagcggcaaaccctgcagatgggctttcgtcaggct
ggctccagcgagctggtgtcggtgactcagtgcccggtgctggcgccggagctggagcga
ctgctgacgccgctgcgcgcctgcctgagcgggctgcaggcggtgaagcgcctggggcat
gccgaactggtgctggcggacaacgggccgctgctggtgttgcggcacctggatgcgctc
aggccggccgaccgcgaggcgctgctgaccttcgcccggcaaaatgccgtaacgatttat
ttggcgtcggacagcgaacaactggagaaactgtgcggtgatacgccgtattatcaggtt
gacgggctacgcttagacttcagtccgcgcgactttattcaggtgaacgatgcggtcaac
cagcagatggtggcgcaggcgctggagtggctggagattcagcccgacgatcgggtgctg
gatctgttctgcggtatgggcaatttcaccctgccgctggctcggcgggcgaaagcggtg
gtcggcatcgaaggtgttgccacgctggtagcgaatgggcaatataatgcacataagaat
ttactgagtaatgcgtcgttttttcatcagaacctggaagaagacgtggagcggcagcct
tgggcgcaacagggatttgataaggttatgttggatcctgcccgggcgggcgcggctgga
gtgatgtcacatattgtaaaactggcgccggagcgggtggtgtacgtttcctgtaacccc
accacgctggcgcgcgacagcaaaacgttgctgtccgccggttatcgtcttgcgcgtgtg
cgtatgctggatatgttcccgcacacggggcatcttgaatcaatggcgctgtttatccgt
caggaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (25)   

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