KEGG   Serratia sp. MYb239: CLM71_18455
Entry
CLM71_18455       CDS       T05477                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
serm  Serratia sp. MYb239
Pathway
serm03030  DNA replication
serm03430  Mismatch repair
serm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:serm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLM71_18455
   03430 Mismatch repair
    CLM71_18455
   03440 Homologous recombination
    CLM71_18455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:serm03032]
    CLM71_18455
   03400 DNA repair and recombination proteins [BR:serm03400]
    CLM71_18455
Enzymes [BR:serm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CLM71_18455
DNA replication proteins [BR:serm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CLM71_18455
DNA repair and recombination proteins [BR:serm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CLM71_18455
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AVJ18970
Position
complement(3860137..3863625)
AA seq 1162 aa
MAEPRFIHLRVHSDYSMIDGLAKTGPLVKRAAALTMPALAITDFTNLCGLVKFYGTAHGA
GVKPIIGADFHVQSDVLGDELAELTVLAANNTGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEYREGLILLSGARMGDVGKFMLRGNQAQVDQCLDFYQQYFPDSYYLELIRTGRPDEEN
YLHAAVALAAERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RSEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMTTEDFLVAKSKEGL
EERLEFLYPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKSGEEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEDGAKSIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVAPWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRVDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq 3489 nt   +upstreamnt  +downstreamnt
atggccgaacctcgttttattcacctgcgcgttcacagcgactactccatgatagatgga
ctcgccaagaccggcccgttggtgaagagggccgcggcgcttaccatgccggcgctggcc
atcaccgactttaccaacctgtgcggcctggtgaaattttatggcacggcgcacggcgcc
ggggtaaagccgatcatcggcgcagatttccacgtacagagcgacgtgctgggcgatgag
ctggccgagctgacggtactggcggcgaacaacaccggctatcaaaacctgacgctgctg
atttcccgtgcttaccagcgcggctacggcgcggcagggccgattatcgaccgcgactgg
ctgattgaataccgcgaagggctgattctgctgtccggcgccagaatgggcgacgtgggc
aaatttatgctgcgcggcaaccaggcgcaggtcgatcagtgtctggatttttaccaacaa
tacttccccgacagttactacctggagctgatccgcaccggacgcccggacgaggagaac
tacctgcacgcggcggtggcgttggcggctgaacgcggcctgccggtggtggccaccaac
gacgtacgtttcttggtagaagacgattttgacgcgcatgaaattcgcgtcgctatccat
gacggctttaccctcgacgatcccaaacgcccgcgcaactatagcgcgcagcagtatatg
cgcagcgaagatgagatgtgcgagctgtttgccgatattcctgaggcgctgatcaacagc
gttgaaatcgccaagcgctgcaacgtcaccatccgtctgggcgaatatttcctgccgcag
ttcccgaccggtgagatgaccaccgaagacttcctggtcgccaagtcgaaagaggggctg
gaagagcgcctcgagtttctgtacccggatccggaggttcgcgcccagcgacgccctgaa
tatgatgagcgtctggatatcgagctgaaggtcatcaaccagatgggtttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggataacgatgtgccggtagggccg
ggacgtggctctggtgccggctcactggtggcctacgcgctgaaaatcaccgatctggat
ccgctggagttcgatctgctgttcgaacgtttccttaacccggaacgtgtctcgatgccc
gacttcgatgtcgacttctgcatggaaaaacgcgaccgggtgatcgagcacgtggcggac
atgtacggccgcgaggcggtatcgcagattattaccttcggcaccatggcggcgaaagcg
gtaatccgcgacgtgggccgcgtgctggggcatccgtatggcttcgttgaccgtatctcc
aagctggtgccgcctgacccgggcatgacgctggagaaagcctttgccgccgagccgcag
ctgccggaaatctatgaggcggatgaagaggtcaaagcgctgatcgatatggcgcgcaag
ctggaaggcgtcacccgtaacgccggtaaacacgccgggggcgtggtgatcgcgccgacc
aagattaccgacttcgcgccgctgtactgcgacgccgaagggcatcacccggtgacgcag
ttcgacaagaacgatgtggaatacgccggtctggtgaagtttgacttcctggggctgcgt
actctgaccatcatcgactgggcgctggagatgatcaacgcccggcgcgccaaaagcggc
gaggagccgatagatatcgcggcgatcccgctcgatgacaagaaaagtttcgatatgctg
cagcgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaagacctgatc
aaacgcctgaagcccgactgtttcgaagatatgatcgcactggtggcgctgttccgcccg
gggccgctgcagtccggcatggtagataactttatcgaccgtaagcacggtcgtgaagag
atctcctacccggatatccagtggcagcatgagtcgcttaaaccggtgctggagccgacc
tacggcattatcctgtatcaggaacaggtgatgcagattgcccaggtgctggccggctat
acgctgggcggcgcggatatgctgcgtcgtgcaatgggtaagaaaaagccggaagagatg
gcgaaacagcgctcggtgtttgaagatggcgcgaagagcatcggcgtcgacggcgaactg
tcgatgaaaatctttgacctagtggagaaattcgccggttacggctttaacaaatcccac
tctgccgcctatgcgctggtatcctaccagacgctgtggctgaaggcgcattatccggcc
gagtttatggcggcggtgatgaccgccgatatggacaacaccgataaggtggtcggcctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggacatcaacagcggcctg
tatcacttccacgtcaatgatgacggcgagatcgtttacggtatcggcgcgattaaaggc
gtgggtgaagggccgattgaggctattcttgaagcacgcaacagcggcgagcagggctat
tttaaagatctgtttgacctgtgcgcgcgctcggatatcaaaaagcttaaccggcgtatt
ctggaaaagctgattatgtccggcgcattcgaccggctggggccgcaccgcgccgcgctg
atgaactcgctgcctgatgcattgaaagcggcggaccagcatgccaaggccgaggctatc
ggccaggtggatatgtttggcgtactggcggaagcgccggaacaggtggaacagtcctac
gccaacgtggcgccgtggcaggagcaggtggtgctggacggtgagcgggaaacgctgggg
ctgtatttgaccggccacccgattacccagtacctgaaggagatcgaacgctacgccggc
ggcctgcgtttgaaagatatgcacccgacggatcggggcaaaatgactaccgccgtcggg
ctggtggtcgccgcgcgcgtgatggtcaccaagcgcggcaatcgtatcggtatttgcacc
ctggatgaccgttccggacgcctggaggtgatgttatttaccgacgcgttagaaaaatac
cagcatttgttggaaaaagaccgtatcctgattgccagtggacaggtcagctttgatgac
tttagcggtgggcttaaaatgaccgcccgcgagctaatggacatcagtgaagcccgtgaa
aaatatgctcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgccagtcgttggaaccccatcgatcggggacgattccagtgcatctgtac
tatcaacgggtcgacgctcgtgccaagctgcgttttggcgcaacctggcgagtgacgccc
acggaccgcttgttgatagacttacggactttggtaggtaatgagcaggtggaactggaa
tttgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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