KEGG   Salmonella enterica subsp. enterica serovar Enteritidis P125109: SEN3938
Entry
SEN3938           CDS       T00776                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta'-subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
set  Salmonella enterica subsp. enterica serovar Enteritidis P125109
Pathway
set03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:set00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SEN3938 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:set03021]
    SEN3938 (rpoC)
   03400 DNA repair and recombination proteins [BR:set03400]
    SEN3938 (rpoC)
Enzymes [BR:set01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SEN3938 (rpoC)
Transcription machinery [BR:set03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SEN3938 (rpoC)
DNA repair and recombination proteins [BR:set03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SEN3938 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CAR35509
UniProt: A0A6C7HUZ9
Position
4242217..4246440
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
TPQVTAEDASASLAELLNAGLGGSDNE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccgactgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgttgcgcgatatcgaacgcgtactgtac
ttcgaatcttatgtggttatcgaaggcggtatgaccaacctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagccttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
cttaggttgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaaactggaactgcgtggcctggccaccactatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgctgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaaagatgaaaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcgtccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatttctgaggcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatctaaagcgatgatggataac
ctgcaaactgaaaccgtgattaaccgtgacggccaggaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtcgcgcaggatctggtggtgaccgaagatgactgtggtacgcacgaaggtatc
ctgatgaccccggttatcgaggggggcgatgttaaagagccgctgcgtgaccgcgttctg
ggtcgtgtgacggcggaagatgtgctgaagccgggtacggcggacattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcaaactccgttgacgccgtt
aaagtgcgttccgttgtatcctgcgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggttaagaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttatggc
gctgtcatggcgaaaggtgatggcgagcaggttgccggcggcgaaaccgtggcaaactgg
gacccgcacaccatgccggttatcaccgaagtgagtggtttcatccgcttcactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaactgaccggtttgtcttcgctggtg
gttctggattcggctgaacgtactaccggtggtaaagatctgcgtccggcgctgaaaatc
gttgatgctcagggtaatgacgttctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcgcgtcgtccgaaagaaccggccattctggcggaaatcgca
ggtatcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggtgattacgccggtt
gatggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggggaacgtgtagaacgtggtgatgtgatttccgacggtccggaagcgccgcacgatatt
ctgcgtctgcgtggtgttcatgctgtgacgcgttacatcgttaacgaagtccaggatgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagcgccggtagttccgacttcctggaaggcgaacaggtt
gaatattcccgcgtcaagatcgctaaccgcgagctggaagcgaacggcaaagtgggggct
accttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgcgggcgagcagccagca
acaccgcaggtcactgcggaagatgcatctgcaagcctggcagaactgctgaacgcaggt
ctgggcggttctgataacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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