KEGG   Serratia ficaria: SAMEA4384070_0262
Entry
SAMEA4384070_0262 CDS       T06444                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sfj  Serratia ficaria
Pathway
sfj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sfj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SAMEA4384070_0262 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfj03021]
    SAMEA4384070_0262 (rpoC)
   03400 DNA repair and recombination proteins [BR:sfj03400]
    SAMEA4384070_0262 (rpoC)
Enzymes [BR:sfj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SAMEA4384070_0262 (rpoC)
Transcription machinery [BR:sfj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SAMEA4384070_0262 (rpoC)
DNA repair and recombination proteins [BR:sfj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SAMEA4384070_0262 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: SNV82666
UniProt: A0A240AIF9
Position
1:285052..289278
AA seq 1408 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKTAEGEWTTQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGILMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVITEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTEFLEGEQAEVSRVKIANRQLEAEGKIPATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGNLGGSDDE
NT seq 4227 nt   +upstreamnt  +downstreamnt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcgtggtcgttcggcgaagttaagaag
ccggaaaccattaactaccgtacgttcaagcctgaacgcgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatggggcacatcgagctggcttcgccgactgcgcacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtgctgtac
ttcgaatcctatgtggtggttgaaggcggcatgaccaacctcgagcgccgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagccattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgacttcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggccgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgcgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagccgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagctatccagctgcacccgctggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtgctgaacggttcgaaagaagccgagcgcgtttaccgtgccggt
ctggcgtcgctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaaaaccgcagaa
ggcgagtggacgacccagaccagcattatcgacaccactatcggtcgcgccatcctgtgg
atgatcgtacctaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gccgaccagatcatgtacaccggttttgcctatgcggcccgttcaggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgcggcgaacgaacgcgttgccaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatcttcatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggacctggtagtgaccgaagacgactgtggcactcacaacggcatc
ctgatgactccggttatcgaaggtggtgacgttaaagagccgctgcgcgaacgcgttctg
ggtcgtgtgactgcagaagatgtcatcaagccgggtacggctgacatcctggtgccgcgc
aacaccctgctgaacgagaagacctgtgacctgttggaagagaattctgtcgacagcgtt
aaagtccgttccgtagttagctgtgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggcgaggccatcggcgttatcgcggca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcggcagagtccagcattcaggttaagaacaaaggtagcctgaagctg
agcaacgttaagttcgttatgaacgcagcgggcaagctggttattacctcacgtaatacc
gagctgaagctgatcgacgaattcggccgtaccaaagaaagctacaaagtgccttacggc
gccgtgatgggcaaaggtgacggtgcggaagttaacggcggcgaaaccgtggctaactgg
gatccgcacaccatgccggtcatcaccgaagtgagcggtttcattcgcttcgccgacatg
atcgacggccagaccattactcgccagaccgacgaactgaccggtttgtcttctctggtg
gtactggacagcgcagagcgtaccggcagcggtaaagacctgcgtccggcactgaaaatc
gttgacgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggcaaagcgattgtgcagctggaagacggcattcagatcggcgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggcgatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatctctccgttg
gacggcagcgacgcttacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggcgaagttgtggaacgtggtgacgttgtttccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaggttatcgttcgtcagatg
ctgcgtaaaggcaccatcgtcagcgctggtggcaccgagttcctggaaggcgagcaggct
gaagtttcacgcgtcaagattgccaaccgtcagctcgaagctgaaggcaagatcccggca
accttctcccgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgccgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgcgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggaccgcatgcgccgtcgtgcacagggcgaagcgccggtt
gttccgcaggtgagcgcggaagaagcgacagccaacctggccgaactgctcaatgcaggc
aacctgggcggcagcgacgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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