KEGG   Serratia ficaria: SAMEA4384070_0519
Entry
SAMEA4384070_0519 CDS       T06444                                 
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
sfj  Serratia ficaria
Pathway
sfj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAMEA4384070_0519 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfj03019]
    SAMEA4384070_0519 (deaD)
   03009 Ribosome biogenesis [BR:sfj03009]
    SAMEA4384070_0519 (deaD)
Enzymes [BR:sfj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SAMEA4384070_0519 (deaD)
Messenger RNA biogenesis [BR:sfj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SAMEA4384070_0519 (deaD)
Ribosome biogenesis [BR:sfj03009]
 Prokaryotic type
  rRNA helicases
   SAMEA4384070_0519 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_19 DRTGG AAA_22
Other DBs
NCBI-ProteinID: SNV85739
UniProt: A0A240ARA1
Position
1:565589..567523
AA seq 644 aa
MTTEFETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLAKLQPEEELEME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGNDRRRDARPDSRDGDRPRRER
RDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
ILNHFTRTRILNKPMNMQLLGDAQPHERRERREGGAGERRGNGRPFNGERREGAGAPRRS
FGERREGGNAGGERRGGNFNRDGKPAPRRDDSAPTAPRRRFGDA
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgactactgagtttgaaacctcttttgctgacctggggctgtctgctccaatcatttcc
gccctgaccgatctgggctatgaaaaaccatcaccgatccaggctgagtgtattcctcac
ctgttgaacggccgcgacgtgctgggcatggcacagaccggtagtggtaaaaccgcagcg
ttctcgctgccgctgctgcataacctgcaggcagacctgaaagcgcctcagatcctggtg
ctggcgccgacccgcgaactggcggttcaggttgccgaagcaatgaccgatttctccaaa
cacatgcatggcgtaaacgtcgtggccctgtacggcggccagcgttatgacgtgcagctg
cgcgccctgcgtcagggcccgcaaatcgtggtgggtaccccaggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggcctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggctgagatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgatccgtcgcattacccgc
cgctttatgaaagagccgcaggaagtgcgcatccaatccagcatcaccacccgcccagac
atcagccagagctactggactgcgcaaggcatgcgcaagaacgaagcgctggtgcgtttc
ctggaagcggaagactttgacgcggcgatcatcttcgtgcgcaccaaaaacgcgaccctg
gaagtggccgaagcgctggaacgcagcggttacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagactctggagcgcctgaaagacggtcgtctggacatcctg
atcgccaccgacgttgcggcgcgtggtctggacgttgagcgcatcagcctggttgtgaac
tacgacatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggccgtgcc
ggtcgtgccggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccattccggaagtcgagctgccaaacgcagagctgctg
ggtcagcgtcgtctggccaagttcgccgcgaaagtacagcagcagctggaaagcagcgat
ctggacatgtaccgtgcgctgctggctaaactgcagccggaagaagagctggaaatggaa
accctggccgcagcgctgctgaaaatggcccagggcgaacgccctctgatcctgccgccg
gatccggtgttcaaaccgcgtcagcgccgtgagttcaacgatcgtgacgatcgcggcaac
gaccgtcgtcgcgatgcgcgtccagacagccgtgacggtgaccgcccgcgtcgtgaacgt
cgcgacgtcggcgaaatgcagctgtaccgcatcgaagtgggccgtgatgacggcgtggaa
gttcgtcatatcgttggcgctatcgctaacgaaggcgacatcagcagccgttacatcggt
aacatcaagctgttcgcttcccactccaccatcgagctgccgaaaggcatgccgggcgag
atcctgaatcacttcactcgcacccgcatcctgaacaagccgatgaacatgcaactgctg
ggcgatgcacagccgcacgaacgtcgtgagcgtcgtgaaggcggcgccggcgagcgccgt
ggcaacggtcgtcctttcaacggcgaacgccgtgaaggcgcaggcgctccgcgtcgttct
ttcggtgaacgtcgcgaaggcggcaacgccggcggcgagcgccgtggcggcaacttcaat
cgtgacggcaagccggctccgcgtcgtgatgactcagcgccaacggctccacgtcgccgt
ttcggtgatgcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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