KEGG T04949: SPHFLASMR4Y

Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01211

Entry

SPHFLASMR4Y_01211 CDS       T04949

Symbol

rsmD

Name

(GenBank) ribosomal RNA small subunit methyltransferase D

K08316

16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]

Organism

sfla Sphingorhabdus sp. SMR4y

Brite

KEGG Orthology (KO) [BR:sfla00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sfla03009]
    SPHFLASMR4Y_01211 (rsmD)
Enzymes [BR:sfla01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.171  16S rRNA (guanine966-N2)-methyltransferase
     SPHFLASMR4Y_01211 (rsmD)
Ribosome biogenesis [BR:sfla03009]
Prokaryotic type
  rRNA modification factors
   16S rRNA modification factors
    SPHFLASMR4Y_01211 (rsmD)

SSDB

Motif

Pfam:

Cons_hypoth95 MTS Methyltransf_25 Methyltransf_31 PrmA UPF0020 DNA_methylase Methyltransf_16 Met_10

Other DBs

NCBI-ProteinID:

ASK87977

UniProt:

A0A220W580

Position

1269451..1269987

AA seq 178 aa
MRIIAGQWRGRKIVAPKGDTTRPTADRTRERLFSMLTSRLGDFEDLQILDLFSGSGALGL
EALSRGAAHCTFVEQDPEAVRTLEKNIETLGADADIRIGSVLHLGAARKAYDLILMDPPY
DTGAGAVALDKLGRHGWFAPSSWIAVETARHEKVEVKGFDLDVERDSGKARLHILRPA

NT seq 537 nt +upstreamnt +downstreamnt
atgcgcataatcgcaggccaatggcgcggacggaaaattgttgcgccgaaaggcgacacc
accaggccgaccgccgaccgcacgcgcgagcggctgttctcgatgctgaccagccggctc
ggtgattttgaagatttgcagatactcgatctgttttccggatcaggcgcgctgggcctg
gaagcactgtcacgcggcgccgcccattgcaccttcgtcgagcaggatcccgaagcggtt
cggacgctggaaaagaatatcgagacgcttggcgccgatgccgatatccggatcggttcg
gtcctccacctcggtgcagcgcgcaaggcctatgatctgatcctgatggacccgccctat
gatacgggcgccggcgcggtggcgctggacaagcttggccggcacgggtggttcgctcca
tcgagctggattgccgtcgaaacggcgcgtcacgaaaaggtggaagtgaaaggctttgat
cttgatgtggaacgggacagtggcaaggcgcggctgcacatcctgcgccccgcctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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