KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_02429
Entry
SPHFLASMR4Y_02429 CDS       T04949                                 
Symbol
capD
Name
(GenBank) UDP-glucose 4-epimerase
  KO
K15894  UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
Organism
sfla  Sphingorhabdus sp. SMR4y
Pathway
sfla00520  Amino sugar and nucleotide sugar metabolism
sfla00541  O-Antigen nucleotide sugar biosynthesis
sfla01100  Metabolic pathways
sfla01250  Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00520 Amino sugar and nucleotide sugar metabolism
    SPHFLASMR4Y_02429 (capD)
  09107 Glycan biosynthesis and metabolism
   00541 O-Antigen nucleotide sugar biosynthesis
    SPHFLASMR4Y_02429 (capD)
Enzymes [BR:sfla01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.115  UDP-N-acetylglucosamine 4,6-dehydratase (configuration-inverting)
     SPHFLASMR4Y_02429 (capD)
SSDB
Motif
Pfam: Polysacc_synt_2 Epimerase Polysacc_syn_2C 3Beta_HSD NAD_binding_10 GDP_Man_Dehyd NmrA NAD_binding_4 RmlD_sub_bind KR F420_oxidored adh_short NAD_Gly3P_dh_N Shikimate_DH
Other DBs
NCBI-ProteinID: ASK89170
UniProt: A0A220W8K9
Position
complement(2480600..2481634)
AA seq 344 aa
MLDDVCLMITGGTGSFGNAVVRRFLDSNVREIRIFSRDEKKQDDMRKLYRNDKLKFFLGD
VRSRDSLSDAMHGVDFVFHAAALKQVPSCEFFPLEAVNTNVLGTANAIDAAHRAGVRRMI
CLSTDKAVYPINAMGTSKAMMEKVATGKARAIDPERMTICCTRYGNVMASRGSVIPLFVR
QIQAGEPLTITDPDMTRFMMTLDHAVDLVLFGYEQGVTGDVLVQKAPAATIHILAKALLE
LFEKPDHPINILGTRHGEKKHETLLSREELAQSVDLGEYYRVPADMRDLNYGVYVESGES
RISESFDYTSENTQQLDVEGMKDLLLQLPFIRSTLAGEPADSEV
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgttagatgatgtttgcctgatgatcaccggcggcaccggcagttttggcaatgccgtg
gtgcggcgctttctggacagcaatgtccgcgaaatccgcatcttcagccgcgacgagaag
aagcaggacgatatgcgcaagctgtatcgcaacgacaagctcaaattcttcctcggcgac
gtgcgcagccgtgacagcctgtccgatgccatgcacggcgtcgatttcgtgtttcacgcc
gccgcgctgaagcaggttccgtcctgcgaattctttccgctcgaggccgtgaacaccaat
gtccttggcaccgccaacgcgatcgatgcggcgcaccgcgccggcgtcaggcggatgatc
tgcctgtccaccgacaaggcggtctacccgatcaatgcgatgggcacctccaaggcaatg
atggaaaaggtcgcgaccggcaaggcccgcgcgattgatccggaacggatgaccatctgc
tgcacccgctatggcaatgtcatggcctcgcgcggctcggtcatcccgctgttcgtgcgc
cagatccaggcgggcgagccgctgacgatcaccgaccctgacatgacccgcttcatgatg
acgctggaccatgccgtcgatctggtgctgttcggctatgagcagggcgtgaccggtgat
gttctggtgcaaaaggcgccggccgcgaccatccacatcctcgccaaggcgctgctcgag
ttgtttgaaaagcccgaccatccgataaacattctcggcacgcgccatggcgagaagaag
cacgagaccctgctttcgcgcgaagaactggcgcaatcggtggatctcggcgaatattac
cgggtgccggccgacatgcgcgacctgaattacggcgtctatgtcgaatcgggggaaagc
cggatcagcgaatcctttgactatacgtcggaaaacacgcaacagcttgatgtcgagggc
atgaaagacctgctgctgcagcttcctttcatccgttccacactggccggtgaaccggca
gattccgaggtttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (33)   

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