KEGG   Scleropages formosus (Asian bonytongue): 108925051
Entry
108925051         CDS       T04919                                 
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
sfm  Scleropages formosus (Asian bonytongue)
Pathway
sfm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108925051 (mtrex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfm03019]
    108925051 (mtrex)
   03041 Spliceosome [BR:sfm03041]
    108925051 (mtrex)
   03009 Ribosome biogenesis [BR:sfm03009]
    108925051 (mtrex)
   03016 Transfer RNA biogenesis [BR:sfm03016]
    108925051 (mtrex)
Messenger RNA biogenesis [BR:sfm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     108925051 (mtrex)
Spliceosome [BR:sfm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    108925051 (mtrex)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    108925051 (mtrex)
Ribosome biogenesis [BR:sfm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    108925051 (mtrex)
Transfer RNA biogenesis [BR:sfm03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    108925051 (mtrex)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII Death_3 Anthrax-tox_M nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 108925051
NCBI-ProteinID: XP_018592272
UniProt: A0A0P7V389
Position
6:complement(17066500..17096166)
AA seq 1033 aa
MADAFGDELFSVFEDEQASSSKRKKLTPGQKTGKGNHGPDKAENSSTAQGKREFENDGDD
VIFGKKPKIETPSAEELNLAELMPQVKVEQVETVEGCTHEVALPASENYTPLKPRVGKAA
KEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
TPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSGGKWDPKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYAIQVAKLDFNSDEEKKLVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGI
NMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVLEKMKKLE
EQYNAIEIPNEESVVTYYKIRQQLAKLGKDIEEYLHKPKYCLPFLQPGRLVKVKNEGDDF
GWGVVVNFSKKSNVKAGTGELDPLYVVEVLVNCSKESVRNAATEAARPCKPGEKGEMQVV
PVMLHLLTSISSVRLYIPKDLRPFDSRQSVLKSLQEVQKRFPDGVPLLDPIDDMGIKDQG
LKKIIQKVEAFELRMYSHPLHNDANLESVYKLCEKKAQIAADIKSAKRELKRARTVLQMD
ELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTSEQATALL
SCFVFQENASELPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLSSFRSHLMDV
VYTWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq 3102 nt   +upstreamnt  +downstreamnt
atggcggacgccttcggagacgagctgttcagcgtgtttgaagacgaacaagcaagttca
agtaaacggaaaaagctcaccccgggacagaagacaggtaaaggaaatcatggtccggat
aaagcggaaaacagctccaccgctcagggaaagagagaattcgaaaatgatggtgatgat
gtcattttcggaaagaagccgaagatcgaaacgccatctgcagaagagctaaaccttgca
gagctcatgcctcaagtgaaggtggaacaggtggagactgtggaaggctgcacccatgag
gtcgccctgccagccagtgaaaactacacaccactgaagcctcgagtgggaaaagcagca
aaggagtatcccttcattctggacccctttcagcgagaagccattctgtgcattgacaat
aaccagtctgtcctagtttctgctcacacctctgcgggaaagactgtgtgtgcagagtat
gccattgccctggctctgcgagagaagcagcgagtgattttcaccagccccatcaaagcc
ctgagcaatcagaaataccgagagatgtacgaggagttccaggatgtgggtctaatgaca
ggtgatgtgaccatcaaccccacagcctcctgcttggtcatgaccactgagattttaagg
agcatgctgtatagaggctctgaggtgatgagggaggtggcctgggtaatctttgatgag
atccattacatgagggattcagaacgtggtgttgtttgggaggaaaccatcatcctgctt
cctgataatgtgcattatgtcttcctttctgccaccattcccaacgcaaggcagttcgct
gagtggatctgtcaccttcacaagcagccgtgtcatgtggtatacacggactaccgccca
actccgctgcagcactacatctttccagcgggtggcgatggacttcatcttgtggtggat
gaaaatggagacttcagagaagacaacttcaacacggcaatgcaggtgctgcgagatgct
ggggattcaggcagcagcggtggaaagtgggaccccaaaggccggaaagggggcaccaaa
ggtccatccaacgttttcaagattgtgaagatgattatggaaagaaactttcagcctgtc
attattttcagcttcagtaagaaggagtgcgaggcatatgccatacaggtggccaagctg
gatttcaattcagatgaagagaagaagcttgtggaagaagtgttcaacaatgccattgac
tgcttgtcggacgaagacaaaaaacttccacaggtggagcatgtcctgcccctgctgaag
cgaggcattggcatccaccatggcggtctcctgcccatcttgaaggagaccattgagatc
cttttctcagaaggcctgctgaaggccttgtttgccacagagacctttgccatgggaata
aacatgccagctcgcacagtgctcttcaccagtgctcgcaagtttgatgggaaggacttc
cgctggattacgtctggtgaatacattcagatgtctgggcgtgctgggagacgaggcatg
gacgagagggggatcgtgatcttcatggtggatgagaagatgagccctactgtgggaaag
cagcttctcaagggctctgcggaccccctcaacagcgccttccacctgacctacaacatg
gtgctgaacctgttgcgagtggaggagatcaatccagagtacatgctggagaagtccttc
taccagttccagcactatagagccgtccctggtgtccttgagaaaatgaagaagctggag
gaacagtacaatgccatagaaatccccaatgaggagagtgtggtcacatactacaaaatc
agacagcagctggccaaactagggaaggatatcgaggagtacctccacaaacccaaatac
tgcttgcctttcctgcaaccaggaagactagtgaaggtgaaaaatgaaggtgatgacttt
ggatggggggttgtcgtcaatttctctaagaagtcaaatgttaaggctggcacaggagag
ctggaccccctttatgtggtggaggtgctggtcaactgcagcaaagagagtgtgaggaac
gctgccacagaggctgccaggccctgcaaacctggagagaagggcgagatgcaagttgtt
cctgtaatgcttcatctgctcacaagtatcagctctgtccgcctctacatccccaaagac
ctgcggccctttgatagccgacagagtgtgctgaagtcgttgcaggaggttcagaagcgc
ttccctgatggcgtgccacttctggatcccattgatgacatgggcatcaaggaccaggga
ttgaagaagatcatccagaaggtggaggcctttgagctcagaatgtactcgcatcccctg
cacaacgatgccaatttggagtctgtctacaagctctgtgaaaaaaaggcacagattgcg
gcagacatcaagagtgcgaagcgagagctgaagcgagcgcggaccgtgctgcagatggac
gagctcaagtgccgcaagcgtgtgctgcgtcgcctgggttttgccacatcctcagacgtc
atcgagatgaagggccgcgtggcctgtgagatcagcagtgcagatgagctgctcctgacg
gagatgatgttcaacggcctcttcaacgacctcacttccgaacaggcgacggcactgctc
agctgcttcgtgttccaggaaaatgccagcgagttgcccaagctgacggagcagttagcc
ggaccgctgcggcaaatgcaggaatgtgccaagcgcatagccaaagtgtcagctgaggcc
aagctggaggtggacgaggaaacgtacctgagctcattccgttcccacctcatggatgtg
gtgtacacctgggccaacggcgccaccttcgcgcagatctgcaagatgacggatgttttt
gaagggagcatcatccgctgcatgaggcgtctggaggagctgctgaggcagatgtgtcag
gcagccaaggccataggaaacacggagctggagaataagtttgccgaaggtatcacaaaa
atcaagagggacatcgtctttgctgccagtctgtacttgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (50)   

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