KEGG   Shewanella frigidimarina: Sfri_0459
Entry
Sfri_0459         CDS       T00395                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sfr  Shewanella frigidimarina
Pathway
sfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sfri_0459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfr03021]
    Sfri_0459
   03019 Messenger RNA biogenesis [BR:sfr03019]
    Sfri_0459
Transcription machinery [BR:sfr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sfri_0459
Messenger RNA biogenesis [BR:sfr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sfri_0459
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ABI70321
UniProt: Q088J4
Position
complement(526763..528025)
AA seq 420 aa
MNLTELKDTPISDLVSLAESMNLENMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVN
FDKPESSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPEELQKMWILRKILHPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgaatttaacagaattaaaagacacgccaatttcagatctagtttcgcttgctgaaagc
atgaatctggaaaacatggctcgtacccgtaaacaagatatcatcttctcaattttgaaa
gctcacgctaaaagcggagaagacatcttcggtggcggtgtattagaaatcctccaagac
ggatttggatttttaagaagttcagatggctcataccttgcgggtcctgacgatatttat
gtttctccaagtcaaattcgtcgctttaacatgcgtactggtgacagtatttttggtaaa
atcaggccgccgaaagaaggcgaaagatactttgcactgttgaaagtcagtgaagtcaac
tttgataaaccagaaagctctcgcaacaaaatcctgtttgaaaacttaaccccattacat
gcagaagagcgtcttcgcatggagcgcggtaatggttcaacagaagacatcacctctcgc
atccttgatctttgttctccaatcggtaaaggccagcgtggtttgattgttgcgccgcca
aaagccggtaaaacattgttactacagaatattgctcaaagtattacttataacaaccca
gatgtggtgttaatggtattacttatcgatgaacgtcctgaagaagtgaccgaaatgcag
cgtatggttaaaggcgaagtcattgcttctacctttgatgaaccagccagccgtcacgtt
caagtagccgaaatggttatcgagaaagcaaaacgtttagttgagcataaaaaagacgtc
gtcattttgttagattcgattactcgtttagcccgtgcttataacaccgtcatcccttca
tcgggtaaagtgttaaccggtggtgttgatgctaacgcattacatcgtcctaagcgtttc
tttggtgctgcacgtaacattgaacacggtggcagcttaaccattatcgccacagccctg
gttgatacaggctcgaaaatggacgaagtaatttacgaagaatttaaaggtactggtaac
caagagttacacctttctcgtaaagctgctgaaaaacgcgtattcccagcgattgacttc
aaccgctctggtactcgtcgtgaagaaaaactaacgacgccagaagaacttcagaaaatg
tggattttacgtaaaatcttacatccaatggacgaagtttctgcaatggaattcttaatc
gataaattggctatgaccaaaactaacgaagaatttttcactgcaatgaagcgcgctaag
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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