KEGG   Shewanella frigidimarina: Sfri_3270
Entry
Sfri_3270         CDS       T00395                                 
Name
(GenBank) penicillin-binding protein 1B
  KO
K05365  penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
Organism
sfr  Shewanella frigidimarina
Pathway
sfr00550  Peptidoglycan biosynthesis
sfr01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Sfri_3270
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01003 Glycosyltransferases [BR:sfr01003]
    Sfri_3270
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:sfr01011]
    Sfri_3270
Enzymes [BR:sfr01000]
 2. Transferases
  2.4  Glycosyltransferases
   2.4.99  Transferring other glycosyl groups
    2.4.99.28  peptidoglycan glycosyltransferase
     Sfri_3270
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     Sfri_3270
Glycosyltransferases [BR:sfr01003]
 Polysaccharide
  Bacterial polysaccharide (excluding LPS)
   Sfri_3270
Peptidoglycan biosynthesis and degradation proteins [BR:sfr01011]
 Peptidoglycan biosynthesis and degradation
  Glycosyltransferase/DD-Transpeptidase (Class A PBP)
   Sfri_3270
SSDB
Motif
Pfam: Transgly UB2H Transpeptidase Beta-lactamase2
Other DBs
NCBI-ProteinID: ABI73106
UniProt: Q07Y08
Position
complement(3910920..3913220)
AA seq 766 aa
MSKKTKKSSANTKKSGSSWWQKLWSLTWKLSIVGIAVVSFYAIYLDQIIAQKFEGQKWHL
PAQVFSRSMALYPGAAVNHPQLMAELKLLGYRKVSNPRQVGEFSASSTRIELWRRPFLHP
EGNQAEQRVMISFDSEGVSSVKRMSDKRELAVFHLEPVLLDRIITGDGEDRLFVRTPEMP
SMIIDALILVEDRSFYDHFGVNPLAIARAAVVNITAGRTVQGGSTLTQQLAKNFFLSSER
SIVRKVREAIMALIIDFRYSKDEILEAYLNEVYMGQDKARGVHGMGLASQFYFGRPIGEL
TVSQQAFLVAVIKGPSYYNPWRYPERAQERRDLVLRLLMESDKLTVAQYKAAAESPIGLR
SAKKSVHQKLPAFFAVVKQELRDRYGDSLLKQSGVKVYTTLDPMAQEAAEKAVLSTMASL
DKRAKNVQVGMVVTDKYTGGIAAMVGDKQPSYEGFNRAVEIRRPIGSLIKPFVYASALRQ
ADRFTLATPVEDKPITLKNEQGKTWSPKNVDKKFSGQVPLLNAFKDSMNVPTVNVGLAVG
VEKVAATLKKSGWEDDISPYPSMLLGAVNGSPLMVAQVYQTIADEGRYRKLSSITAVLDS
QNQALEVTRVPSSMAIDPATDYLVQYAMNQVVRNGTAKRLGAAFPGVRLAGKTGTSNDSR
DSWFAGFDERNVAAIWVGQDDNSKTGLYGSSGAMAVYQAFLHERPPLSLRMMPVNGVING
YFDRTTGVAKKGNCDNIIGLPALDASYHPVANCGESLSWWQKLVGE
NT seq 2301 nt   +upstreamnt  +downstreamnt
atgagtaaaaaaaccaaaaagtcttcagccaacacaaaaaaaagtggctcatcttggtgg
caaaaactgtggtcgctcacatggaaattatcaatcgttggtatcgctgttgtgagcttt
tatgcgatttatttagaccaaattattgcgcagaaatttgaaggccaaaagtggcattta
cctgcccaggtgtttagtcgttcaatggcattatatccaggggctgcggtaaaccatccg
cagttaatggctgagcttaagttactcggttatcgtaaagtgtctaatccacgacaagtt
ggcgaattttctgcttcaagtactcgtatcgaattatggcgtcgaccatttttgcatccc
gaaggcaatcaagccgagcaacgagtgatgattagttttgactctgaaggcgttagctca
gttaagcggatgtcagataaacgggaattagcggtatttcatttagaaccggtattactt
gaccgtattattaccggcgatggcgaagaccgtttatttgtgcgaacgccagagatgcct
tcgatgatcatcgatgcacttattttggttgaagaccgcagcttttatgatcactttggg
gttaacccattggcgattgcacgtgctgccgtagtcaacattactgctggtcggacggta
caaggtggttcaaccttaacccagcagttagccaaaaacttctttttaagcagtgaacgt
tcaattgtgcgtaaagtgcgtgaagcgataatggcattgattatcgattttcgttatagc
aaagatgaaattctagaagcttatctcaatgaagtgtacatgggccaagacaaggctcgt
ggtgtgcatggtatggggttagcttcacaattctactttggtcgccctattggtgagctg
accgtgtcgcagcaagcctttttagttgcggtcattaaaggaccttcttattacaacccg
tggcgttaccctgaacgagctcaagagcgccgtgatttagtgttacgtctgctaatggaa
agcgataaattaaccgttgcccaatataaagcagcagcagagtcgccaatcggtttacgc
agcgctaaaaaatcggtacatcagaagttaccagcgttttttgctgtggttaaacaagag
ttacgcgaccgttatggtgattcgttactgaagcagtcgggcgtaaaagtgtataccacg
ctcgatcctatggcccaagaagccgcagaaaaagccgtgttgtctaccatggcatcactg
gataaacgggctaaaaacgttcaagtcggcatggttgttactgacaaatataccggcggc
attgctgcgatggtgggtgataaacaaccgagttatgaagggtttaatcgcgcggttgag
attagacgtcccattgggtcgttaatcaaaccattcgtgtatgccagtgcattacgccaa
gcagatagatttactctagccactcccgtagaggacaaaccgatcacccttaaaaatgag
caagggaaaacatggtcacctaaaaacgttgataaaaagttcagtggtcaagtgcctttg
ttaaacgcatttaaagattcaatgaacgttccaacggttaatgttggtttggctgttggc
gttgaaaaggttgctgctacattgaaaaaatcgggctgggaggatgatatatccccttat
ccatcgatgttgttgggggcggtgaatggctctccattaatggtggctcaagtttatcaa
accattgctgatgaaggccgctatcgtaagttatcatcaattaccgcggtattagacagt
caaaaccaagcgttggaagtgactcgtgttccatcgtcgatggcgatcgatccggcgacc
gattacttagttcaatatgcaatgaaccaggtagtacgtaatggtacggctaagcgttta
ggcgcagcatttcctggagttcgtttagcgggtaaaaccggcactagtaatgatagtcgt
gactcgtggtttgctggatttgatgaacgtaacgtagcggctatttgggttggtcaagac
gataacagtaaaacgggcctgtatggcagcagcggcgcaatggcagtgtatcaagccttt
ttacatgaacgtccaccgctcagtttacgtatgatgccggttaatggcgtaattaatggc
tattttgatcgtacaacgggtgtggctaagaaaggtaattgtgacaatattatcggtcta
ccagcattagacgcaagctatcatccggtagctaattgtggtgagtcattatcttggtgg
cagaagctggtgggagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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