KEGG   Shigella flexneri Shi06HN006 (serotype Yv): SFyv_5328
Entry
SFyv_5328         CDS       T03315                                 
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sfs  Shigella flexneri Shi06HN006 (serotype Yv)
Pathway
sfs03030  DNA replication
sfs03410  Base excision repair
sfs03420  Nucleotide excision repair
sfs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SFyv_5328
   03410 Base excision repair
    SFyv_5328
   03420 Nucleotide excision repair
    SFyv_5328
   03430 Mismatch repair
    SFyv_5328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfs03032]
    SFyv_5328
   03400 DNA repair and recombination proteins [BR:sfs03400]
    SFyv_5328
Enzymes [BR:sfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SFyv_5328
DNA replication proteins [BR:sfs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SFyv_5328
DNA repair and recombination proteins [BR:sfs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SFyv_5328
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SFyv_5328
   MMR (mismatch excision repair)
    DNA ligase
     SFyv_5328
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SFyv_5328
SSDB
Motif
Pfam: DNA_ligase_OB DNA_ligase_aden RNA_ligase
Other DBs
NCBI-ProteinID: AIL42963
Position
complement(3810632..3812149)
AA seq 505 aa
MEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRE
RSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANS
TLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDR
LKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPG
QAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ
EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFIS
RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH
QFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
EWKENAQIKKLGSWLAAQQITGFEP
NT seq 1518 nt   +upstreamnt  +downstreamnt
gtggaagacggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgcttt
gtgagcgagccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggtt
gcccatacgggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaa
cgtagcgatctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgg
gacgggaaactgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacg
cagaaagttagcttaatttccgctgtgctgcaaaccgttagcgggcctttagccaacagt
acgcttcagggggaaatatttctccagcgcgaggggcatatccaacaacaaatgggggga
ataaatgcccgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgacacgcta
aactcactggctgtttttgtctgggcatggccggatggaccgcagttaatgaccgatcgt
ttaaaggagctggctaccgcaggttttactctaacgcagaggtatacccgtgcggttaaa
aatgctgatgaggttgcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtc
accgatggcgtggttgtgcgaggggctaaggaacccgaatcccgtcattggctaccgggc
caggcggagtggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaag
gcgattcagtttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacct
gtcatgctggatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcag
gagtgggatattgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcct
cgcattgatgatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaac
cgctttaacccgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttca
cgcttagtctggctggggtcaaaacaggttctggggctggatggcattggtgaggccggt
tggcgcgcgctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacg
ccagagcaattacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcat
cagtttaatctggctcgtaaccagccttttactcgctgggtgatggcaatgggaataccg
ctaacccgggcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagc
acggagcagttctggcagcagctgccggggactggatctgggcgcgccagacaggttatt
gaatggaaggaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatc
acaggttttgaaccttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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