KEGG   Shigella flexneri NCTC1 (serotype 2a): NCTC1_03077
Entry
NCTC1_03077       CDS       T03751                                 
Symbol
rumA
Name
(GenBank) 23S rRNA 5-methyluridine methyltransferase,23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD,23S rRNA m(5)U1939 methyltransferase,Predicted O-methyltransferase,23S rRNA (uracil-5-)-methyltransferase RumA,tRNA (Uracil-5-)-methyltransferase
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
sft  Shigella flexneri NCTC1 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:sft00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sft03009]
    NCTC1_03077 (rumA)
Enzymes [BR:sft01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     NCTC1_03077 (rumA)
Ribosome biogenesis [BR:sft03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    NCTC1_03077 (rumA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT RrnaAD Met_10 Methyltransf_11 MTS Cons_hypoth95 Methyltransf_15 UPF0020 Methyltr_RsmB-F Methyltransf_23 Methyltransf_4 PrmA FtsJ Ubie_methyltran Methyltrans_SAM MetW Methyltransf_32 UDG CMAS
Other DBs
NCBI-ProteinID: CDX08220
UniProt: A0A658Z122
Position
1:complement(2835498..2836799)
AA seq 433 aa
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQ
YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI
ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL
GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE
TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV
LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT
GHLESMVLFSRVK
NT seq 1302 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctgcaaaacgacgcacgacgacgcgtcagatcataaccgtttca
gtcaacgacctcgactcttttggtcagggcgtggcgcgacataacggcaaaacgttattt
atccccggattattgccgcaggaaaacgcggaagttgctgttactgaagataaaaaacag
tatgcccgcgctaaagtcgtacgccggttaagcgatagcccggaacgcgaaacgccacgc
tgtcctcattttggcgtatgcggcggctgtcagcaacaacacgccagcgtggatttacag
cagcgaagcaaaagtgcggcactcgcccgattaatgaaacacgatgtctctgaagtgatc
gccgatgttccctggggctatcgccgccgcgcgcgtttaagtctgaactacttaccgaaa
acacagcaacttcagatggggtttcgcaaagcgggctccagtgacattgtcgacgtcaaa
caatgccccattttagcgccccaacttgaagcattgctgcccaaagtcagggcatgtctg
ggcagcttacaagctatgcgccatcttggtcatgttgaactggtacaggcaaccagcggc
acgctgatgattttgcgccataccgcaccgctaagttcggcagatcgcgaaaaactggaa
cgcttttcgcattctgaaggcctggatctgtatctcgcccccgatagtgagatactcgaa
accgtctctggtgagatgccctggtatgactcaaacgggttgcgcttaacttttagcccg
cgcgattttattcaggtcaatgcgggtgtgaaccaaaaaatggtagcgcgtgcgttggaa
tggctggatgtgcaacctgaagatcgcgtactggatctgttctgcggtatgggcaacttt
acactgccattggcgacacaagctgccagtgtggtcggtgtagaaggtgttcctgcgctg
gtggaaaaaggccagcagaatgcgcgtcttaatggcttacagaatgtgacgttttatcac
gaaaatcttgaagaagatgtcacaaagcagccgtgggcgaaaaacggcttcgataaagtg
ttgctggacccggcgcgagcaggtgccgcaggtgttatgcagcaaattataaaactggaa
cctattcgtatagtttatgtatcctgtaaccctgcaacgctggctcgggatagcgaagcg
ttattaaaagcaggatataccattgcgcgactggcgatgctggatatgttcccacacacg
ggacatctggaatcgatggtacttttctcgcgcgttaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (23)   
   Pfam (23)   
All databases (32)   

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