KEGG   Shigella flexneri NCTC1 (serotype 2a): NCTC1_04702
Entry
NCTC1_04702       CDS       T03751                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq,Host factor-I protein,RNA-binding protein Hfq,RNA chaperone Hfq,LSM domain
  KO
K03666  host factor-I protein
Organism
sft  Shigella flexneri NCTC1 (serotype 2a)
Pathway
sft02024  Quorum sensing
sft03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sft00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC1_04702 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NCTC1_04702 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sft03019]
    NCTC1_04702 (hfq)
   03036 Chromosome and associated proteins [BR:sft03036]
    NCTC1_04702 (hfq)
Messenger RNA biogenesis [BR:sft03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NCTC1_04702 (hfq)
Chromosome and associated proteins [BR:sft03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NCTC1_04702 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: CDX09756
UniProt: A0A6D2WQG4
Position
1:4424482..4424790
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccatctcgcccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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