KEGG   Shigella flexneri 2457T (serotype 2a): S1373
Entry
S1373             CDS       T00128                                 
Symbol
rnb
Name
(GenBank) RNase II, mRNA degradation
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
sfx  Shigella flexneri 2457T (serotype 2a)
Brite
KEGG Orthology (KO) [BR:sfx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sfx03016]
    S1373 (rnb)
Enzymes [BR:sfx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     S1373 (rnb)
Transfer RNA biogenesis [BR:sfx03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    S1373 (rnb)
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2 OSR1_C ODP PilZ
Other DBs
NCBI-ProteinID: AAP16785
UniProt: P59107
Position
complement(1341116..1343050)
AA seq 644 aa
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLTIVPDHPLLKDAIPCRAARGLNH
EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTSLDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWKPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD
PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISSE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM
AERDVGDWLYARFLKDKAGTGTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgcca
cgcgctgaaggggtggtaaaagccacagaaaaaggctttggcttcctggaagtcgacgca
caaaaaagttatttcattccgccgccgcagatgaaaaaagtcatgcatggcgaccgaatt
atcgcggtgatccacagtgaaaaagaacgtgaatccgcagagccagaagaactggttgaa
ccgttcctgactcgtttcgtgggtaaagttcagggcaaaaatgaccgtctgaccatcgtt
cctgatcatccacttttaaaagacgccattccttgccgcgcagcccgtggcctgaaccac
gagtttaaagaaggcgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgat
cgttctttctatgctgaactgacacaatacatcacttttggtgacgaccactttgtaccg
tggtgggttacccttgcgcgccataatctggaaaaagaagcaccagacggcgtcgctacc
gaaatgctcgatgaaggtctggttcgtgaagatctgacctcgctggattttgtcaccatc
gacagtgccagcactgaagatatggatgacgcccttttcgctaaggcgctgccggatgac
aaacttcagctgattgtggcgattgccgatccaaccgcgtggattgctgaaggcagcaag
ctggacaaagccgcgaaaattcgcgcattcaccaactatctgcctggcttcaacatccct
atgctgcctcgcgagctttctgacgatctctgctcactgcgcgccaatgaagtccgcccg
gtactggcatgccgcatgacgctctccgctgatggcaccattgaagataatatcgaattc
tttgccgccaccatcgaatccaaagcgaagctggtgtatgaccaggtttctgactggctg
gaaaataccggtgactggaagcctgaaagtgaagcaattgccgaacaagtccgtttgcta
gcgcaaatttgccaacgccgcggcgagtggcgtcataaccacgcactggtgtttaaagat
cgcccggattaccgctttattctcggtgaaaaaggtgaagtgctggatatcgtcgccgag
cctcgtcgcattgccaaccgtatcgtcgaagaagcgatgattgccgctaacatttgtgcg
gcccgcgtactgcgcgataagctcggttttggcatctataacgtgcatatgggctttgat
ccggcgaatgccgacgcgctggcagcgttgctgaaaacgcacggtctgcatgtcgatgcc
gaagaagtgctcacgctggacggtttctgcaaactgcgtcgtgaactggatgcgcaacca
actggtttcctcgacagccgcattcgtcgcttccagtcatttgctgaaattagctctgaa
cccggtcctcactttggcctcggtctggaagcatacgccacctggacttcgccgatccgt
aaatatggcgacatgatcaaccaccgtctgctgaaagcggttatcaaaggcgaaactgcg
acgcgtccgcaggatgaaatcactgtccaaatggccgaacgtcgccgtctcaaccggatg
gcagaacgtgatgttggcgactggttatacgcacgcttcctgaaagataaagccgggacc
ggcacccgtttcgcggcggaaattgtcgatatcagccgtggcggcatgcgtgtgcgtttg
gttgataacggcgctatcgcctttattccggcacctttcttacacgctgtgcgcgatgaa
ctggtttgcagccaggaaaacggcactgtacaaattaaaggtgaaacggtttacaaagta
actgacgttattgacgtcaccattgccgaagtccgcatggaaacccgcagcattattgcg
cgcccggtcgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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