KEGG   Sinocyclocheilus grahami (golden-line barbel): 107562544
Entry
107562544         CDS       T04918                                 
Name
(RefSeq) superkiller viralicidic activity 2-like 2
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107562544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107562544
   03041 Spliceosome [BR:sgh03041]
    107562544
   03009 Ribosome biogenesis [BR:sgh03009]
    107562544
   03016 Transfer RNA biogenesis [BR:sgh03016]
    107562544
Enzymes [BR:sgh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107562544
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     107562544
Spliceosome [BR:sgh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    107562544
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    107562544
Ribosome biogenesis [BR:sgh03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    107562544
Transfer RNA biogenesis [BR:sgh03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    107562544
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 107562544
NCBI-ProteinID: XP_016102666
Position
Unknown
AA seq 937 aa
MADAFGEDLFSVFDEEQVVLPADEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQS
VLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDV
TINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDN
VHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDENG
EFREDNFNTAMQVLRDAGDTGGNAGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVII
FSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRG
IGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRW
ITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVL
NLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKKLEEGYNAIRIPNEESVVTYYKIRQ
QLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDLDFGWGIVVNFQKKTNVKAAVGDAE
PLFVVEVLLHCSKDSVKNAATEAAKPAGPGEKGEMQVVPVILHLITSISSVRLYIPKDLR
PYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHS
DPKLEAVYTLCEKKALIAGDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIE
MKGRVACEISSADELLLTEMVFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGP
LRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEG
SIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGKT
NT seq 2814 nt   +upstreamnt  +downstreamnt
atggcggacgcctttggagaagatttgttcagcgtgtttgatgaagaacaggtggttctt
cctgcagacgaggaatacactccactgaaaccacgcgttggaaaagcagctaaggagtac
ccgttcatactcgaccctttccagcgtgaggccatcctgtgcatcgataacaaccagtct
gtgcttgtgtcggcccacacatcggcaggaaagaccgtgtgtgcggagtatgccattgct
ctggctctccgagaaaagcagcgagtgatcttcacaagccccatcaaagctctgagcaat
cagaagtacagagagatgtacgaagagttccaggatgtgggtctgatgaccggtgacgtc
accattaaccccacggcttcctgcctggttatgaccaccgagattttgaggagcatgctg
tacagagggtcagaggttatgagggaggtggcgtgggtcatctttgatgagatccattac
atgagagactcagagcgtggagtggtctgggaggaaaccatcatccttctgccggacaac
gtgcatcatgtcttcctgtctgccaccattcccaacgctcgacagtttgccgagtggatt
tgtcaccttcacaaacagccctgccacgtggtgtacaccgactaccgccccactccactg
cagcactacgtctttccagcagggggcgatggactccaccttgtcgtggatgagaacgga
gagttcagagaagacaattttaacacagcaatgcaggtcctgagggatgcaggggacacg
ggaggcaatgctgggggcaaatgggaccccaaaggcagaaagggtggaaccaaaggtcca
tccaatgtctttaagattgtgaagatgatcatggaaaggaacttccagccggtgattatc
tttagcttcagtaagaaagaatgtgaggcctacgcactgcaggtggccaaactggatttc
aacacagacgacgagaagaaactggtggaagaagtgttcaacaacgccacagactgcctg
tctgatgaagacaaaaagctgccacaggtggagcatgttctgccattgctgaagagagga
attggaattcatcatggcggcctcctcccgatcctgaaagagaccattgagatcctgttc
tctgaggggctgctaaaggccttgtttgctacagaaacatttgccatgggaatcaacatg
cctgcaagaaccgtgctcttcaccagtgcgcgcaaatttgacggcaaagacttccgctgg
atcacctccggagagtatatccagatgtcaggacgtgctggcagaagaggaatggacgag
aggggaatagtcattttcatggtggatgagaagatgagccctgcggtgggcaaacagtta
ctgaagggttcggcggatcctctgaacagtgcgttccacctgacctacaacatggtgctc
aatctactgcgtgtggaggagatcaacccagagtacatgctggagaaatccttctaccag
ttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaagctggaggagggg
tataatgcaatacgaatccctaatgaagagagcgtggtgacctactacaagatccgtcag
cagctggccaaactgggcaaagaaattgaggaatttattcacaaacctagatactgcctg
ccttttctgcagccgggcagactggtcagggtgaaaaaagaagatctggatttcggttgg
ggtatagtcgtcaatttccaaaagaagacaaatgtcaaggctgcagttggggatgctgag
ccgttatttgtggtggaggttctgctccactgcagcaaagacagcgtgaagaacgcggcc
acggaggcagccaaaccagcaggcccaggagaaaagggcgagatgcaggttgttcctgtg
attcttcatctcatcacctccattagctctgtgcgcctctacattcctaaagacctgcgg
ccgtatgacaaccgacagagcatgcttaaatccatacaggaggtccagaaacgtttccca
gatggcgttcctctgctagatcccatagacgacatgggtatcaaggatccagcgctgaag
aaggtcattcagaaggtggaggcgttcgagcacaggatgtacacgcaccccctgcacagc
gaccccaagctggaggccgtttacactctgtgtgagaagaaagcgctgattgcaggcgac
attaaagcggcaaagcgcgagctaaagaaagcacgtaccgtgctgcagatggacgagctg
aagtgcaggaagcgtgtgctgcggcgcctgggattcgccacttcctctgatgtcatcgag
atgaaaggtcgtgtggcctgtgagatcagcagtgcagatgagctgttgctgacagagatg
gtgtttaacgggctgttcaacgacctgacggcggagcaggccaccgcgctcctcagctgc
tttgtcttccaggaaaatgctaacgagatgcccaaactgacggagcagctggccggaccg
cttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgcagaggccaagctg
gacgtggatgaggacacttacctgaaccagttccgcccgcacctgatggatgtggtctac
acctgggccaacggctcctcattctctcagatatgcaaaatgacagacgtgtttgaaggc
agtattatccgctgtatgcgcagattggaggagctcttgaggcagatgtgccaggcagcc
aaggccattggaaacacggagctggagaataagtttgccacgggtaagacatga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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