KEGG   Sinocyclocheilus grahami (golden-line barbel): 107586261
Entry
107586261         CDS       T04918                                 
Name
(RefSeq) transcription elongation factor SPT5-like isoform X1
  KO
K15172  transcription elongation factor SPT5
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    107586261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sgh03021]
    107586261
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107586261
Transcription machinery [BR:sgh03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     107586261
  RNA polymerase I system
     107586261
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     107586261
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF3912 DUF150_C Ribonuc_P_40 Arabino_trans_N
Other DBs
NCBI-GeneID: 107586261
NCBI-ProteinID: XP_016129020
Position
Unknown
AA seq 1083 aa
MSDSDDSDFSDNPSERSSEAEEVEENEEEEQGSVAGSDKAEEEEGEDLEDEEEYDEEEEE
DDDRPRKKPRHGGFILDEADVDDEYEDEDPWEDGAEDILEKVNAEEAEVSNIDHVVLDED
HSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKSA
IEGVGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDF
MIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LIQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHPGGGGQQHRGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGV
VKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGRTSTHLRTPMYGSQTPIYGTGSR
TPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRPDDEYEFAYDDE
PSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQ
PSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQATPSPSPVGYSPMTPGAPSPGGY
NPHTPGSNIDQASSDWVTTDIMVRVKDTFLDGGVINQTGVIRSVTGGMCSVFLQATEKVV
SISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGK
LEV
NT seq 3252 nt   +upstreamnt  +downstreamnt
atgtctgacagcgatgacagcgatttctctgataatccgagcgagaggagcagcgaggct
gaggaggtggaggagaatgaggaggaggaacaggggagtgtagctggcagtgacaaggct
gaggaggaggagggagaagatttggaggatgaggaggagtatgatgaagaggaagaagag
gatgatgaccggcccaggaaaaaacctcggcatggtggcttcatcttggatgaagccgat
gttgacgatgagtatgaagatgaagatccatgggaggatggtgctgaagacatcttagaa
aaagttaacgcagaagaggccgaagtatccaacattgaccatgtagttttggatgaggat
cactccggttcaaggaggttgcagaatctctggagggattcacgtgaggaagctctgggg
gagtattacatgagaaaatatgccaagtcctcgggtggcgagcatttctatggcggctct
gaggatctttctgatgacatcacccagcaacagttgcttcctggggtcaaggatcctaat
ttgtggaccgttaagtgtaagattggagaggagagagcaactgccattgccttgatgcga
aaattcattgcttatcagtgcaccgacacaccgcttcaaatcaaatcagtggtggcccct
gagcacgtcaaaggttatatctatgtggaggcgtacaagcagacccatgtcaagtccgcc
attgagggtgttggaaacctgcgtatgggcttctggaaccagcagatggtgcccattaaa
gagatgacagatgtgctgaaggtggttaaggaagtgaccaaccttaagcccaagtcttgg
gttcgtcttaagagaggcctttataaagatgacattgcacaggtggactatgttgaaccg
agccaaaatacgatctcactgaaaatgattcctcgtattgatttagatcgcattaaagcg
aggatgagtatgaaagactggtttgcgaagagaaagaagtttaagaggcccgctcagagg
ctttttgatgctgaaaagatcaggtctctaggtggtgaggtcagccatgacggagacttc
atgatatttgaaggcaaccgatacagccgcaaaggcttcctgtttaaaagctttgctatg
tcagccgtgatcacagaaggggtcaaacccactctgtcggagctggagaagtttgaggac
cagccagaggggattgaccttgaagtagtcacagagacaacaggtaaggagcgtgagcac
aatctccaggcaggagataatgtggaagtgtgtgagggggagttgatcaaccttcagggt
aaaatcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaagatctcaag
gaccctcttgagtttccagctcatgagttgaggaagtacttccgtatgggcgaccatgta
aaggttatcgcagggcgttttgaaggtgacacaggcctcatagtccgtgtggaggagaac
tttgttattctgttctctgatctcactatgcatgagttgaaggtcttgccccgggacctg
cagctgtgctctgagactgcctcaggtgtggatgcaggaggccagcatgagtggggagag
ctgatacaattagacccccaaactgtaggtgtcattgtcaggctggaaagagagaccttc
caggttctgaacatgcatgggaaagttttgactgtacggcaccaggcagtaaacagacgg
aaggacaaccgctttgctgtcgctctcgactctgagcaaaacaacatccatgtgaaggat
attgtaaaagtcattgatggacctcattcgggccgtgaaggtgaaattcgccacatcttc
agaggctttgcttttcttcactgcaagaagctggttgaaaacggaggcatgtttgtctgt
aaagcacgccacctcgttctggcgggcggctcaaagcccagagacgtgaccaattttaca
gtgggaggctttgcacctatgagtccacgcatcagcagcccgatgcaccctggcggaggt
ggacagcagcacaggggcggaggtggtggcatgggtcggggccgtgggcgacgagacaat
gatcttattgggcagactgtccgtatatcccagggaccatacaaaggctacattggagtg
gtgaaggatgccacagaatcaaccgctagggtagaactccactcaacttgccagaccatc
tctgtggaccggcagcgtctaacaactgttggtggcaaagaaagacaaggaaggacttcc
acccatttgcgaaccccgatgtatggttcccagacacccatttatggaactggctctcgt
acccccatgtatggtagccagacaccccttcatgatggaagccgtactcctcactatggc
tcccagactcctctgcatgatgggagcaggacgccaggtcagagcggcgcttgggacccc
agcaatccaaacacaccatcacggcctgatgatgaatacgagtttgcctatgacgacgaa
ccctcaccgtctcctcaaggctatgggggtacgcccaatcctcagactcctggctaccca
gaagtgccctccccacaggtcaaccctcagtacaaccctcagactcctgggactcctgcc
atgtacaacactgaccagtactccccatatgcagctccctctccgcaagggtcttaccag
cccagccccagcccacagagttaccaccaagtggccccaagcccagtgggataccaaaac
acacactcgcctgccagttaccaccccaccccatcacccatggcctaccaggccactccg
agtcccagtccggtagggtacagtccaatgactcctggagctccatctccaggaggctac
aaccctcacactcccggatctaacatcgaccaggcctccagtgactgggtcaccacagac
atcatggtgcgtgtgaaagacacattcctggatggaggcgtcatcaatcagaccggtgta
atccggagtgtcaccggggggatgtgctccgttttcctgcaagccacggagaaggtcgtt
agtatttctagtgaacacttggaacctgttacgccaaccaaaaacaataaggtgaaggtg
attctgggagaggacagggaggccacaggagtcctgctcagtattgatggtgaagacggc
attgttcgaatggaactggatgagcaactgaagattctcaatctccgcttccttgggaaa
ttggaagtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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