KEGG   Sinocyclocheilus grahami (golden-line barbel): 107596476
Entry
107596476         CDS       T04918                                 
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
  KO
K06237  collagen type IV alpha
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510  Focal adhesion
sgh04512  ECM-receptor interaction
sgh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107596476
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107596476
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107596476
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sgh04147]
    107596476
   00536 Glycosaminoglycan binding proteins [BR:sgh00536]
    107596476
Exosome [BR:sgh04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   107596476
Glycosaminoglycan binding proteins [BR:sgh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107596476
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 107596476
NCBI-ProteinID: XP_016142707
Position
Unknown
AA seq 1686 aa
MKLWSFVLPVVLYAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGELGQAGSSGPE
GFIGAPGPVGPKGEMGHVGRNGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGNRARDGFPGLPGGPGVPGPKGLKGEPFYIDLSGQTFFVEGPPGPVGSSGP
MGPRGPDGFTGLPGPPGPSGPPGSPGQGYKGEPGEKGDVGSPGDPGCPLVSGVVELVGFP
KGDKGTKGDKGYDGVPGFPGRPGQPGLFGYRGETGEKGILGLPGSRGPPGLNGPPGIPGI
KGFPGTPGFPGQQGFTSPKGERGNPGPPGPIVDPVGGIKGPPGDPGFPGYPGITGATGFP
GVPGQPGPPGQPAFVSGRPGVSGFPGGRGPKGQRGNPGRNSYGPEGLPGSQGFPGPPGLP
GPPGSTSNLFSAGQPGFPGQPGPRGPPGDRGFKGFKGEDGDCNCLGGGTIGAQGPQGPPG
PTGFVGLNGVKGEIGDLGFPGSRGPQGLDARAGDRGFKGRKGEKGNSFFPEGRGQKGDMG
QQGLPGPLGASGNSGKDGSPGFPGEPGLPGEPGSGVSGDKGFPGIPGFKGRPGDRGEPGI
GYPGVAGFKGSQGDPGFNGLPGTPGPKGSPGDSCGQAGLNDASLEEGGTPLPCRIPGELG
DPGYFGNPGLPGPKGQPDSPGASGRPGFDGPKGERGEPGSGGQPGPQGFPGPRGDPGLPG
ITNAGLPGPPGRDGFPGLPGAKGEPGVVLGATPGGLGSPGRPGEPGDKGQPGVPGLLGRP
GNDGRNGFPGIKGERGVDGIPGLVGPIGPPGEIPPGGVPGPRGPPGAKGFDGPSGCQGFP
GLKGMRGDPGPQGPGGIKGVPGLPGIPGSQGFRGPPGPPGIGTRPGIPGRPGVKGEKGSL
GLLGFPGLPGSPGVPGGPGVKGLPGFDGQDGLPGGTGSRGTKGERGTPGLPGPSPVLPVE
QLEKGQKGEPGGGGLPGFPGPRGDKGFPGSPGRQGFPGLPGVADQAKGFPGQPGLPGIPG
SFGFPGPKGSPGVMGFPGLPGLSGDDGVPGVQGFPGTPGQSGGKGEKGDSYEYSGPPGTK
GVIGNPGFPGGPGLPGEPGDPGFPGILGFQGQKGFPGEPGAPGFGSSPGLPGIRGLPGYP
GQKGRDGDLGRSGAPGSPGEKGFPGSPGLDGLNGLPGSKGLSGVPGVTEGGRTGAPGVNG
LKGERGSSKPGAPGRPGEKGSRGDTGASGLRGWPGNPGPPGPPSPSNIPGPPGDPGLPGL
DGREGPLGPPGLPGPPGPGTVQGDRGDAGLPERPGIPGPRGDPGDFGAPGFQGSPGFKGQ
SGDPGFTGVRGPPGFPGEPGDYGRNGPKGLMGFPGPKGRPGTVVPRNITDSMPLGERGPP
GLDGFVGQEGMPGLPGSPGFPGPKGLRGPVGRLGPVGAVGSPGAFGDPGSPGIQGPTGTQ
GARGPTGMQGLPGPPVRSTGIGYTLVKHSQSSQVPMCPQGMAKLWEGYSLLYVEGQEKAH
NQDLGLPGSCLPHFSTIPFLYCTVDEICYYASRNDKSYWLSTTAPIPMMPVADQQISQYI
SRCSVCEAPSQAIAIHSQDLSIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCL
EDFRATPFIECNGARGTCHYFSNKYSFWLTTVDQNEQFVQGPSQETLKGDEYRSRISRCQ
VCMKIL
NT seq 5061 nt   +upstreamnt  +downstreamnt
atgaagctttggagttttgtgttaccagttgtcttgtatgcagtgtctgctcaaggggga
tcaaagctgcaggagccgtgtgcaggccgggactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaaccaggggaacttggacaggcaggcagcagtggtcctgag
ggtttcattggggctccggggccagttggacccaaaggagaaatgggccatgtaggacgc
aatgggccttctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggacctccaggcttggac
ggctgtaatggcacacgaggtgacccaggcaacagagcccgtgatggatttcctggtctt
cctggtggtcctggagtccctggtccaaaaggtctaaaaggagaaccattttatatagat
ctttctggacaaacttttttcgtcgaaggccctccaggtccagtgggatcttcaggtcca
atggggcctagaggtccagatggatttactggtctgccgggtccacctggtccttctgga
cctccaggaagtccaggtcagggatacaaaggagagccaggagaaaagggagatgtgggc
tcgcccggtgacccaggctgcccactggtcagtggagtggtggagcttgttggctttccg
aaaggagacaaaggaactaagggtgataaaggctatgacggtgttccaggttttccaggg
agaccaggacaaccaggcctatttgggtacagaggtgagactggagaaaagggaatcctg
ggcttgccaggctcaaggggtccacctggtctgaacggtcctcctgggattcctgggatt
aagggcttccctgggactcctggttttccaggacaacaaggttttaccagcccaaagggt
gaaagaggaaacccaggtccacctggaccgattgtggatccagtgggtggaattaaaggt
cctccaggtgatcctggctttcctggttatccggggataactggagctaccggttttcca
ggggttcctggtcagcctggtcctccggggcagcctgcttttgtctcaggtcgtccaggc
gtctctgggttccccggtggccgtggacccaaaggacagaggggaaacccaggtcggaat
tcttatggtcctgaaggtcttcctggaagtcagggttttcctggacctccaggtctccct
ggaccaccgggcagtacatcaaacctgttttccgctggacaacctggttttccaggtcag
cctggtccaagaggacctcctggagacagaggctttaaagggtttaaaggagaagatggt
gactgcaactgtttgggtggaggaacgattggtgcacagggacctcaagggcctccaggg
cccacgggttttgtaggactcaatggagtgaagggagaaattggtgacctaggcttccca
ggatcccgtggtccacagggccttgatgctcgtgcaggtgacagaggctttaaaggacgt
aaaggagagaaaggtaattctttcttcccagaaggcagaggacaaaaaggtgatatgggt
caacagggtcttcctgggccacttggagcaagtggaaactctggaaaggatggatctcct
ggcttccctggagaaccaggtctacctggggagcctggttctggggtgtctggagataaa
gggtttcctggtattccagggttcaaaggtcgtcccggtgacaggggtgaacctggaatt
ggctatcctggtgtagctgggttcaaagggtcacaaggtgatcctggattcaatggtctt
cctggaacacctggacctaaaggatctccaggtgacagctgtgggcaggcggggcttaat
gatgcctctttggaagagggaggaacacccctgccctgtaggattcctggtgaacttgga
gatccaggttactttggaaatcctgggttgccagggccaaagggtcagcctgattcccca
ggagcaagtgggcgcccagggtttgatgggccaaagggtgagagaggagaaccaggctct
ggaggtcagccaggacctcaggggtttcctggacccagaggagatccaggtttaccagga
ataacaaatgctggcttaccagggcctccaggaagagatggttttccaggtttgccagga
gctaagggagaacctggtgtggtgcttggggccactcctggaggtctaggttctccaggg
agaccaggagagccaggagacaagggccaacctggtgtgcctggtttactagggaggcct
ggtaatgatggacgcaatggctttcctggcataaagggagaacgaggtgtggatggaatt
cctggtcttgtaggtcccataggtccaccaggagaaatccctcccggcggtgttcctggt
cccagagggccacctggagctaagggatttgatggaccttcaggctgccaaggtttccca
gggctgaagggtatgagaggagatccagggcctcaagggcctggtggaataaagggtgta
ccaggactccctggcatcccagggtcacagggatttaggggacctcctggaccccctggc
attgggacacgtcccggcatacctggaagaccaggagtaaagggggagaaggggtctctt
ggattgttggggttcccaggtttacctggttctcctggagtcccaggtggcccaggtgtt
aaaggtttacctggttttgatgggcaggatggcttacctggaggaactggatcaagagga
accaaaggggaacgtggtactcctggtcttccaggaccctcaccagtgcttccagtagag
cagctggaaaagggtcaaaaaggtgaaccaggaggtggtggactgcctggtttcccagga
ccaagaggtgataagggttttccagggtcacctggacgtcaaggctttcctggattacct
ggtgttgcagaccaagcaaaaggttttcctggccagcctggactcccaggtattcctggc
tcctttggcttccctggtcccaaaggttcacctggagttatgggcttccctggcttacca
ggcctgagtggtgatgatggtgtacctggtgttcaagggttcccaggaactccaggacaa
tctggtggcaaaggtgagaaaggtgattcatatgaatattctggaccccctggaacaaag
ggtgtgattggaaatcctggattcccaggtggtccaggacttcctggtgaaccaggtgat
cctggtttcccaggaatattgggatttcaaggccagaaaggttttccaggagagccggga
gcacctggatttggtagctcaccaggcctcccaggcattaggggtctccctggttatcca
ggacagaaggggcgtgatggagatttaggccgttctggagctccaggttcaccaggagag
aaaggttttccaggatcacctggtttagatggactcaatggtcttccgggatccaagggc
ttgtctggagttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaatggc
ctgaagggggagagaggctcatcaaagcccggagcacctgggcgccctggagaaaaagga
tccagaggagacactggtgcctctggtttgagaggctggcctggtaatcctggcccccct
ggcccacctagtccttctaatatccctggtcctcccggagaccctggacttccgggatta
gatggacgagaaggtcccttaggccctcctggcctacctggtccaccaggccctggaaca
gtccaaggagacaggggagatgccggacttcctgagcgaccaggaataccaggaccacgt
ggagaccccggtgattttggagcacctggatttcaaggcagtcctggttttaaaggacaa
agtggtgaccctggctttactggtgtacgtggaccaccagggttccctggagaaccagga
gattatggcaggaatggacccaaaggattaatgggttttcccggtcctaagggacgtcca
ggtactgtggtcccgcgtaacataaccgacagtatgccattgggtgaacggggcccacca
ggtcttgatgggtttgttggtcaggaaggaatgccaggcctgccaggcagtccaggattc
ccaggtcccaaaggactcagagggccagtgggtagacttggtcctgttggtgcagttgga
tctcctggagcttttggtgaccccggatctcctggaatccaaggacccacaggaacccaa
ggagcccgtggcccaacaggaatgcaaggtcttcctggtccaccggtgcgcagtaccggt
atcggttatactttggtgaaacacagtcagtccagccaggtgcccatgtgtccgcaaggc
atggccaagctgtgggagggctacagtttgctctatgtggaggggcaggagaaagcacac
aaccaggacctgggattgcccggctcctgcctgccgcatttcagcaccatccccttcctg
tactgcacagtcgatgagatctgctactatgctagtcgcaatgacaaatcctattggctg
tccaccacggcacccattcccatgatgcctgtggcagatcagcagatatctcagtacatt
agccgctgctcagtgtgtgaagctccatctcaagcgatcgctatccatagccaagacctc
agcataccgacctgccctcagggctggagaagtctgtggattggttactccttccttatg
cacacagccgctggtgccgaaggaggcggtcagtcattggtgtctcctggctcttgtctg
gaggatttccgcgccacccccttcatcgagtgcaacggagcccgcggcacctgccactac
ttctccaacaaatacagtttctggttgaccacggtagatcagaacgaacagttcgtccag
ggcccttcccaggagacgctgaagggagatgagtaccggtcacgcatcagtcgctgtcaa
gtctgcatgaagatcttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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