KEGG   Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_01812
Entry
SU5_01812         CDS       T02011                                 
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
shb  Salmonella enterica subsp. enterica serovar Heidelberg B182
Pathway
shb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SU5_01812
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shb03019]
    SU5_01812
   03009 Ribosome biogenesis [BR:shb03009]
    SU5_01812
Enzymes [BR:shb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SU5_01812
Messenger RNA biogenesis [BR:shb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SU5_01812
Ribosome biogenesis [BR:shb03009]
 Prokaryotic type
  rRNA processing factors
   SU5_01812
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AFH45174
Position
complement(2003805..2007008)
AA seq 1067 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAETRDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADITPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQASIQAVENVAVEPQT
VAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE
NT seq 3204 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtactgatgccgaataacccgcgcgcgggtggtatttcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtgcgtaccgcgggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaggccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctgatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaaccgcgttc
aacaccaatctcgaagcggccgacgagattgcccgccagctgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtgcgtcaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcttgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagtgaac
gctattgagacgcgtcaggatggcgtccgctgtgtcattgtcccgaacgatcagatggaa
acgccgcactattccgtgctacgcgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccgggtctgtttagccgcttccttaacgcgctgaaacaactgttc
agcggtgaagaaacgaaagccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacggcagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcagaaacgcgcgacacccgccagcaggaaacg
gcggaaaaagtgaaaactggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaagcgtcaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
cagcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgtcagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgac
acgccggtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgagctggcgaaagttgatttacctgtcgttgccgatatcacgccggagcag
gatgatagcgtagaacctcgcgataataccggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgtaagcggtcagcgtcgccgtcgctatcgtgacgagcgctacccgaca
caatcgccaatgccgttaaccgtcgcctgcgcgtcgccggaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaacagcaggttatcgctgcgaccgta
gcgctcgaaccacaagcgtcgatacaggcggtagaaaacgttgccgttgagccgcagacc
gtcgccgaaccacaggcgccggaagtcgtcgaggtcgagacaacgcatccggaagtgatt
gccgcgccggttgatgaacagccgcaactgattgccgaaagcgatacgccggtggcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaaaccg
caggacgttgtctgcgttgacgatcataaccacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcgcccttccttccac
tttgaaggtaaaggcgcagcaggcggacacagcgccacacgtcacgccagcgccccggcg
acacgcccacagccggtagaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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