KEGG   Sulfuritalea hydrogenivorans: SUTH_00651
Entry
SUTH_00651        CDS       T03591                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
shd  Sulfuritalea hydrogenivorans
Pathway
shd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:shd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SUTH_00651 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shd03021]
    SUTH_00651 (rpoB)
   03400 DNA repair and recombination proteins [BR:shd03400]
    SUTH_00651 (rpoB)
Enzymes [BR:shd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SUTH_00651 (rpoB)
Transcription machinery [BR:shd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SUTH_00651 (rpoB)
DNA repair and recombination proteins [BR:shd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SUTH_00651 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: BAO28461
UniProt: W0SBR3
Position
668610..672680
AA seq 1356 aa
MAYSYTEKKRIRKSFAKRANVLDVPFLLATQIESYTRFLQADVPPAQRRNEGLQAAFTSI
FPIVAHSGNARLHFVEFMLGEPTFDVKECQQRGLTFASPLRAKVRLELLDRDTKAVKEVK
EDQPLYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRIDRRRKMPVTILLKSIGMTHEQILATFFQFDTFHFAKKGI
SFEVVPERLRGEVAKFDILDKAGKLIVAKDKRITVKHIREMAEAGIKKILVPDEFMMGRV
VAHNIVNPETGEVLANANDEITEDLLAKLADGGIEQIQTLYVNDLDRGAYISSTLRIDET
ADQWAARVAIYRMMRPGEPPTEDAVENLFHGLFYSEERYDLSAVGRMKFNRRVGRDEIEG
AGTLSNEDIVDVVRILVELRNGRGEVDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVK
ERLNQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFMETPYRKVGN
SHVTDEIEYLSAIEEGKYVIAQANAQLDKKGKLSDELVSCRFKGEFELKEPPEVQYMDVA
PGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGTAV
QALRGGVVDYIDANRIVVRVNDAETVVGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDL
IAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRFTSIHIEEL
TVVARDTKLGAEEISRDIATLGESQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDKRAQSIIDDMLKGY
KQDLADQMRIVERDTFSRIEKLLTNKTASKGPKKLVKGTKITKAYLETVEHYHWFDISLV
DEEAQQQLENLRDSLEQTRKDFDVAFEAKKKKLTQGDELPPGVQKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIVPIEDMPHMADGTPMDIVLNPLGVPSRMNIGQILETHLGWAAKG
LGHKIGEMLRKQAAAAEIRKLMNKIYNSSGRKEDIDGLSEKEVVELAQNLQGGVPFATPV
FDGAHESEIKTMLELAGLPSNGQVDLFDGRTGESFERQVTVGYMHVLKLHHLVDDKMHAR
STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVNGRTKVYE
NIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLERY
NT seq 4071 nt   +upstreamnt  +downstreamnt
atggcgtattcctacaccgaaaaaaagcgcattcgcaaaagctttgccaaacgggccaac
gtcctcgacgtgccttttcttctggcgacgcaaatcgagtcctacacgcgcttcctgcag
gccgacgtgccgccggcacagcgccgcaacgaaggtctgcaagccgccttcacgtcgatt
ttcccgattgttgcgcactcggggaatgcccgcctgcacttcgtcgagttcatgcttggc
gagccgaccttcgatgtcaaggaatgccagcagcgcggcctgactttcgccagcccgctg
cgcgccaaggtccgtctcgaactgcttgaccgcgataccaaggcggtcaaggaagtcaag
gaagaccagccgctctatatgggcgaaattcccctgatgacgaccaccggctcgtttgtc
atcaacggcaccgagcgcgtcatcgtctcccagctgcatcgttcccccggcgtgttcttc
gagcacgacaagggcaagacccacagctcgggcaagctgctgttctccgcgcgcatcatt
ccgtatcgcggctcctggctggatttcgaattcgatccgaaggatatcctgtacttccgc
atcgatcgccgccgcaagatgccggtgaccatcctgctcaagtcgatcggcatgacgcat
gagcaaatcctcgcgaccttcttccagttcgataccttccatttcgcgaagaagggcatc
tccttcgaagtcgtgccggaacgcctgcgcggcgaagtggcgaaattcgacattctcgac
aaggcgggcaagctgattgtcgccaaggacaagcgcatcacggtcaagcacatccgcgag
atggccgaagccggcatcaagaagatactggtgcccgacgagttcatgatgggccgggtg
gttgcccacaacatcgtgaatcccgaaaccggcgaagtgctggccaacgccaacgacgag
attacggaagacctgctggccaaactggccgatggcggcatcgagcagatccagacgctg
tacgtgaatgacctggatcgtggtgcctacatctcctcgaccttgcgcattgacgaaacc
gccgaccaatgggccgcccgcgtggcgatctatcgcatgatgcgccccggcgagccgcca
acggaagatgcggtggagaacctgttccacggcctgttctattcggaagagcgctacgac
ctgtcggcggtcggccgcatgaagttcaatcgccgcgttggtcgcgacgaaatcgaaggc
gcgggcaccttgtcgaacgaggatatcgtcgatgtcgtccgcattcttgtcgagctgcgc
aacggccgcggcgaagtcgatgacatcgatcacctgggcaatcgccgcgtgcgttcggtc
ggcgaactggccgagaaccagttccgcgccggtctggtgcgtgtcgagcgcgccgtcaag
gagcgtctgaaccaggcggaaagcgacaacctgatgccgcacgacttgatcaatgccaag
ccgatttcggcggcgatcaaggagttcttcggctccagccagctttcgcagttcatggac
cagaccaacccgttgtccgagatcacgcacaagcgtcgcgtttcggcgctgggcccgggc
ggcttgacgcgtgagcgcgccggtttcgaggtgcgcgacgtacacccgacccactacggc
cgtgtctgcccgatcgagacgccggaaggtccgaatatcggcctgatcaactcgctggcg
ctgtatgcgcgcaccaatgagtatggcttcatggaaacgccttaccgcaaggtgggaaac
agccacgtcaccgacgagatcgaatacctgtcggcgatcgaggaaggcaagtacgtgatc
gcccaggccaatgcccaactggacaagaaaggcaaactgagcgacgagctggtttcctgc
cgcttcaagggcgaattcgaattgaaggaaccgcccgaggtccagtacatggacgtcgcg
ccggggcagatcgtttccgtcgcggcatcgctgatcccgttcctggaacatgacgacgcc
aaccgcgccttgatgggcgccaacatgcagcgtcaggccgttccctgcctgcgaccggaa
aaggcgctggttggtaccggcatcgagcgtaccgtggctgtcgattcgggcacggcggtg
caggctctgcgtggcggcgtggtggactacatcgatgccaaccgcatcgtggttcgcgtc
aatgacgcggaaacggtagtcggcgaagtcggcgtcgatatctacaacctgatcaagtac
acccgctccaaccagaacaccaatatcaaccagcgccccatcgtcaaggtcggcgatctg
atcgccaagggcgatgtggtggctgacggcgcctccactgacctgggcgaacttgcgctg
ggccagaacatgctggtcgcgttcatgccctggaacggctacaacttcgaggattcgatc
ctgatctcggagcgtgtagtggccgatgaccgcttcacttcgatccacatcgaggaactg
acggtcgtcgcacgcgacaccaagctcggtgccgaggaaatttcgcgcgatatcgccacg
ctgggcgaatcgcaactcgggcgcctcgacgagtcgggcattgtctatatcggcgccgaa
gtcgaggcgggcgacgtgttggtcggcaaggtgacgccgaagggcgaaacgcaactgaca
ccggaagagaaactgctgcgcgcaatcttcggcgagaaggcttccgacgtgaaggacacg
tccttgcgtgtgccctcaggcatgatcggcacggtcatcgacgtccaggtcttcacccgc
gaaggcatcgagcgcgacaagcgagcccagtcgatcatcgacgacatgctgaaaggttac
aagcaggatctggccgaccagatgcgtatcgtcgagcgcgataccttctcgcggatcgag
aagctgctgaccaacaagactgccagcaagggtccgaagaaactggtcaagggcaccaag
atcaccaaggcctacctcgaaaccgtcgagcactaccattggttcgacatttccctggtc
gatgaggaggcccagcagcaactcgaaaacctgcgcgacagcctggagcagacccgcaag
gatttcgacgttgccttcgaggcaaagaagaagaagctgactcaaggcgacgaactgccg
ccgggcgtgcagaagatggtaaaggtttatctggccgtcaagcgtcgcctgcagcccggc
gacaagatggccggtcgccacggcaacaagggcgtggtttccaagattgtcccgatcgag
gacatgccgcacatggcggacggcacgccgatggacatcgtgctgaaccccctgggcgtt
ccgtcacgaatgaacatcggccagattctggaaacccacctcggctgggcggccaagggt
ctcggacacaaaatcggcgaaatgctgcgcaagcaggcggctgcagccgaaattcgcaag
ctgatgaacaagatttacaactcttccggtcgcaaggaagacattgacggcctgagcgaa
aaggaagtcgtggagcttgcgcagaacctgcagggtggcgtgccattcgctactccggta
ttcgacggtgcgcatgagtccgaaatcaagaccatgctggaactggccggtctgccgagc
aatggccaagtcgacctgttcgacggccgcacgggcgaatccttcgagcggcaggtgacc
gttggttacatgcatgtgctgaagttgcatcacctggtggacgacaagatgcacgcacgt
tccactggcccctacagcctcgtcacccaacagccgttgggcggcaaggcgcagttcggc
ggacaacgcttcggcgaaatggaagtgtgggcgctcgaagcatacggcgctgcctatgtg
ctgcaggaaatgcttaccgtgaagtctgacgacgtcaacggccgtacgaaagtgtacgaa
aacatcgtcaagggcgagcacaagatcgatgccggcatgccggaatcgttcaacgtgctg
gtcaaggaaatccgttcgctggcgatcgacatcgatctcgagcgttactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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