KEGG   Shewanella sp. MR-4: Shewmr4_1516
Entry
Shewmr4_1516      CDS       T00388                                 
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
she  Shewanella sp. MR-4
Pathway
she03030  DNA replication
she03430  Mismatch repair
she03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:she00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Shewmr4_1516
   03430 Mismatch repair
    Shewmr4_1516
   03440 Homologous recombination
    Shewmr4_1516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:she03032]
    Shewmr4_1516
   03400 DNA repair and recombination proteins [BR:she03400]
    Shewmr4_1516
Enzymes [BR:she01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Shewmr4_1516
DNA replication proteins [BR:she03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Shewmr4_1516
DNA repair and recombination proteins [BR:she03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Shewmr4_1516
SSDB
Motif
Pfam: RNase_T CAF1
Other DBs
NCBI-ProteinID: ABI38594
Position
1784102..1784788
AA seq 228 aa
MGPWWVNAKLRWRALRCQHELFKDYYQSLLPLLDLPISRAPLMAMDLEMTGLDPLNDQIL
SIGLVPIENGTIPLGSAQQKLVQIQGSVGQSATIHGILDNHLTEAVSIEEAMAWFVSQTR
GHILVAHHSPLDCRFLQQDILSIYHQAIVIPAIDTLLLEKHRLLREHSVLKEGSLRLGAC
RERYGLPIYGAHSALTDALACGELLLAQVASMGGAEELKVGELLAYSS
NT seq 687 nt   +upstreamnt  +downstreamnt
atgggaccatggtgggttaacgctaagctgaggtggcgagcactgcgctgtcagcatgag
ttatttaaggattactatcaatccttattgccactcttagatttgcccatcagtcgcgcg
cccttgatggcgatggatttggagatgacgggcttagatcctctaaatgaccaaatttta
agtattgggctggtcccgattgaaaatggcactattccacttgggagcgcgcagcaaaaa
ttagtgcaaatccagggcagtgtcggacagagtgcgacgatacatggcattctcgataat
catttaactgaggctgtgagtattgaggaggcgatggcatggtttgtgagccaaacccgt
gggcacatcttggttgcgcaccactctccactcgattgccgttttttacaacaagatatt
ttgtctatttatcatcaagctatcgttatacctgcaattgataccctattgcttgagaaa
catcggttgttacgcgaacactcagtgcttaaagaggggagtctaagattgggagcctgt
cgtgagcgatatggtttgcctatctatggcgcccatagcgcactgacagatgccttagcc
tgtggcgaactgttattagcgcaggtggctagcatgggcggcgccgaggagttaaaagtg
ggggaattattggcttactcgagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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