KEGG T05404: CKQ84

Shewanella sp. WE21: CKQ84_14075

Entry

CKQ84_14075       CDS       T05404

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

shew Shewanella sp. WE21

Brite

KEGG Orthology (KO) [BR:shew00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:shew03009]
    CKQ84_14075
Enzymes [BR:shew01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     CKQ84_14075
Ribosome biogenesis [BR:shew03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CKQ84_14075

SSDB

Motif

Pfam:

tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT MTS Methyltransf_11 Methyltransf_15 Met_10 Methyltransf_23 Methyltr_RsmB-F UPF0020 TehB RrnaAD PrmA Methyltransf_4

Other DBs

NCBI-ProteinID:

AVI66915

UniProt:

A0A2R3EXV0

Position

3224596..3225948

AA seq 450 aa
MAQFFKAKPNSSKQLSAKLSLSVEQLDHLGAGIAQHQGKVVFIPGALPDETVTVQLTEQK
KNYARAKLIKVDTPSSERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGT
EGGALSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCLVLAKPLSD
LIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAELHQIHIC
LQDNEGQFQGVGAELVLPVYQLLDENAQLDAVSLSFTPGNFVQVNGQINKAMVAQAMDWL
APAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD
LSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLE
RGYRLQQLGLIDMFPQTHHIEAMALFELTK

NT seq 1353 nt +upstreamnt +downstreamnt
atggcgcaattttttaaagcaaaaccaaatagttccaaacagttgtcggctaagttatcg
ctgagcgtagaacagctcgatcacttaggtgctggtatagcacaacatcaaggtaaagtc
gtgtttatccctggcgctttgcccgatgaaaccgtgacagtacagctcaccgagcaaaag
aaaaattatgcccgcgccaagttaattaaagtcgatacacctagctctgagcgcgtcgag
cctgagtgtccacactaccacacctgcggcggctgcgacttacagcatatgtcattatcg
ggtcagcgtgagcataaagaagccgcgttgctggatattatggctaagtttgctggcact
gaaggcggtgctttatcgcccgcactcacgggggaaggttggcattatcgtcgccgcgcc
cgtcttgcaactttatttgataaaaataccaagcacttaagtttaggctttcgcgccgcc
agtagcagcaatgtggtgccaatcagtcagtgtctggtgttagctaagccattatcggac
ttgatcgtcccctttgctaagttgctgaaccaattgtcagctaaagccagcttaggtcat
cttgagttaattgccgccgataatggtcactttgccgtgctgcgtatcactaaggcgtta
aacgataaagatctcgctaagttgtcagcctttgctgagctgcatcagatccatatttgt
ctgcaggataacgaaggccaattccaaggcgtcggcgctgagttagtgttacctgtttat
caactgttagatgaaaatgcgcagttggatgcggtgagcttaagtttcaccccaggtaac
tttgtgcaagtgaacggacagattaacaaggccatggtcgctcaagcgatggattggtta
gcgccagcacctgatgagcgcattttggatttgttctgcggcatgggtaatttcagtttg
cccttagcgaaaatgggcgcggatgtgattggcgtcgaaggggttgccgaaatggtgact
caggcacgggtgaacgcgaaagctaacaatctggataaactgaccttttaccacggcgat
ttaagtgcggatttatcccttgagccttggatgggcaagattgataaattactgctcgat
cccgctcgtgcgggggcatttgaaagcttgcaatggctaaagaaaatgaagccgcgcaaa
gtcgtgtatgtttcgtgtaatcctgcgagcttggctcgcgatagcgctgtactgttagag
cgcggttaccgattacagcaattgggacttatcgacatgttcccacaaacacaccatatc
gaagccatggcactgtttgaattaaccaagtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (25)   

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