KEGG   Shewanella sp. WE21: CKQ84_23200
Entry
CKQ84_23200       CDS       T05404                                 
Name
(GenBank) chromosome segregation protein SMC
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
shew  Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:shew00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shew03400]
    CKQ84_23200
DNA repair and recombination proteins [BR:shew03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CKQ84_23200
    Archaeal homologous recombinant proteins
     CKQ84_23200
SSDB
Motif
Pfam: AAA_23 SbcC_Walker_B SMC_N AAA_29 GTP_EFTU cobW ABC_tran
Other DBs
NCBI-ProteinID: AVI68501
UniProt: A0A2R3F0L5
Position
complement(5158484..5161540)
AA seq 1018 aa
MRPLSLSMSAFGPFASIQQLDFTALGTNPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDSLLTEVTFSFQLGNCSYRIRRVPEQDRVKKSGDGSTVQKPEAQLYKI
DAAGNESLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKARELIFSQ
LFQTHIYRRIEDSLKSKAADIRALVKDQRSRRDGILQSAGLASDDELSCELAKLTPELET
AQSAKEQALQQQQWVIKTSDAAQHLLAEFVQFDALTQTVAALDAQQENMAAQTYKLNLAK
QAQHLAPMLEVFVAREQEAKAASLALEHAKTALTNAKKAFDNAELKAADLPVLEASLLEQ
EQVKQQLNALGPQLRELDRLNKTLEQEQTELISAKTQLQNSKNELTTAVQKRRELESALP
QLQANSETRLSLQQAHQQQQQLLSTYQQWQQVAARVSSTQAKLVEAKVKGRQLSAQHQQA
QVAYKALLLTWHQGQAAILARQLQQDEPCPVCGSQTHPQPAQSQELLPSDEALQLALEAE
TNAQEILSKARAEYRGLQTQLETLQQQAQDLAVQLGTAVDIPLDEHTHTLSQYAFSLTQA
EQAHQQLQLLQQEITLLHAQETHLQQKLEQGQTHDSALQSKVDLLQGQLAHMQQSVPSAL
ATLEALTAAIAQNQQSISQIKQQITSVRDLQQQTGQSFVAAKAALNGAENAAEAALAQQT
RAQQQLNQQLVAAGFADQQALFEAMLDEEQQRALASEIEAYQQRSALTKAQCEQLALKLK
DKVPPDSIKLAAELEFAQQALHAAEQAWQLLHTRTVLLMQTQTQLSIADAKAKVLEDEYA
VIGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSSGRMIGVISHVSEMKEQINTRIDINKTSHGSEMTIVLP
NT seq 3057 nt   +upstreamnt  +downstreamnt
atgagaccacttagcctttccatgtcagcctttggcccctttgcatcgattcaacaactt
gattttacggccttggggactaatccgttatttttgattaatggacccactggtgcgggt
aagacgaccttgctcgatggtatttgctttgctctctatggcaaaaccactggtaatgag
cgtgaaggcagccagatgcgctgcgatatggccgatgatagtctgctaacagaagtcact
tttagttttcagttgggtaattgcagttatcgtattcgccgtgtgccagagcaagacagg
gttaaaaaaagcggtgacggctcaacggtgcagaagcccgaagcacagttatataagata
gacgccgcgggtaatgaaagtttgcttgtagcgagcaaagtctctgaggcaaccgctgag
attgaagccttaactggcctcgatgtggagcagtttcgccaagtgatggtgttgccgcag
gggaaatttcgcgaattgttaatggcagactccaaagcaagagaactgatatttagtcag
ctatttcaaacgcatatataccgacgtattgaagattccttaaaaagtaaggctgcagat
atccgcgccttagtgaaagatcaacgcagccgccgtgatggcattttacaaagtgcgggt
ttagcatccgatgacgagcttagctgtgaattagccaagcttacgccagaacttgaaaca
gcccaaagtgcgaaagaacaggcattacagcagcaacaatgggtgataaaaaccagcgat
gccgcccagcatttattggccgaatttgtgcagtttgatgccttaactcaaacggttgct
gcgcttgatgcacagcaagaaaacatggctgcgcaaacctacaaactgaatttggctaaa
caggcgcagcacttggcacccatgcttgaggtgtttgtggcccgtgagcaggaagccaag
gcggcaagtcttgcccttgaacatgcgaaaacagcattaactaatgctaaaaaagccttc
gataacgcagagcttaaggctgctgatttgcccgtgttggaagcgtcgttacttgaacag
gaacaggttaaacagcaactgaatgccttagggccgcagctcagggaattggataggctt
aataaaacccttgaacaagagcaaacggagctcattagcgcgaaaacacaacttcagaac
agcaaaaatgagttaaccaccgcagtccaaaaacgccgtgaattggaatccgctctgccg
caactacaggccaatagcgaaactcgcctctcattgcaacaagcgcatcagcagcaacag
cagttattgtctacctatcagcaatggcaacaagtggcggcaagggtatcgtcgacacag
gcaaaacttgttgaggctaaagtcaaagggcgacaactcagtgctcagcatcagcaagca
caggttgcatataaagccttattgttgacttggcatcaagggcaggccgctattttagcg
cggcaattacagcaagatgaaccttgccccgtttgtggcagccaaacacatccacagcca
gcacaaagccaagagctactcccaagtgatgaagcgctgcaattagcactagaggctgaa
acgaatgctcaagaaatcctgagcaaagccagagcggaatatcgtgggctacaaacgcag
ttagaaaccttgcaacagcaagcacaagatctcgcggtccaattgggcactgcggttgat
attcctttagacgaacatacacataccttgtcgcaatacgctttctcactcactcaagcg
gagcaagcccatcagcagttacagctgttacagcaagagattacattgttgcacgcacag
gaaacgcatctacaacaaaagctagagcaaggacaaacacacgacagtgcactgcaatct
aaagtggatctattgcaggggcagttagcgcacatgcagcaaagtgttccatctgcgctt
gcaacgcttgaggccttaactgcagcaatcgcgcaaaatcagcaaagtatcagccaaatt
aagcaacagatcactagtgttagggatctccaacaacagactggccaatcttttgttgcg
gctaaagcggcacttaatggtgctgaaaatgctgctgaggcggcattagcccagcaaacg
cgtgcacagcagcaactcaatcagcaattagtcgcagcaggttttgccgatcaacaggcc
ttatttgaggccatgctggatgaagaacaacagcgtgcattagccagcgaaattgaggct
taccagcagcgcagtgctttgaccaaggcacagtgcgagcagttagcgcttaagcttaaa
gataaagtgccacctgatagcattaagctggctgctgagcttgagttcgcgcagcaagca
ttacacgcagcagagcaggcatggcagttgcttcacacgcgcacagtattactgatgcaa
acccaaacccagctgagtattgccgatgcaaaagctaaggttttggaagatgaatatgcg
gttatcggcacccttgccgatgtcgctaatggaaatacaggtaataagatcagtctgcaa
cgttttgtgttaagcgtactgcttgacgatgtgttgttagaggcaagccacaggctacac
ctaatgagcaaagggcgttatcgtttactacgtaaggaagatagggccaagggcaacaaa
gcttctgggctcgaattagaagtagaagatgcttatacctccaaagtgcgtcctgtggcc
accttaagcggtggtgaaagttttatggcagcattatctatggcgttaggcctatctgat
gtagtgcaagcctatgcaggtggtattaaactcgatactttatttatcgatgaaggcttt
ggcagtttagatcaagattctttagaactggccattcggaccctgatggatttgcaatcc
tctggccgcatgataggggtgatctcgcacgtgtcggaaatgaaagagcagataaatacc
cgcatcgacatcaataaaacctcacatgggagcgaaatgacgatagttttgccttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (14)   

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