KEGG T04944: CEQ32

Shewanella sp. FDAARGOS_354: CEQ32_16280

Entry

CEQ32_16280       CDS       T04944

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

shf Shewanella sp. FDAARGOS_354

Brite

KEGG Orthology (KO) [BR:shf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shf03032]
    CEQ32_16280 (gyrB)
   03400 DNA repair and recombination proteins [BR:shf03400]
    CEQ32_16280 (gyrB)
Enzymes [BR:shf01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     CEQ32_16280 (gyrB)
DNA replication proteins [BR:shf03032]
Prokaryotic type
  DNA Topoisomerases
   CEQ32_16280 (gyrB)
DNA repair and recombination proteins [BR:shf03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CEQ32_16280 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3

Other DBs

NCBI-ProteinID:

ASF16403

Position

3648752..3651169

AA seq 805 aa
MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI
TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSDV
EFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDV
FHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMEN
EGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLND
YLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSE
IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKK
GKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQ
RYPTHITNRMLYHPMISNEMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKV
YLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSF
IEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTC
LMGDQVEPRREFIEANALNVANLDV

NT seq 2418 nt +upstreamnt +downstreamnt
atgtcagagaatagttacgattcttcgagtattaaggtccttaagggccttgatgcagta
cgtaagagacctgggatgtatattggtgacaccgacgacggtacgggtctacatcatatg
gtgttcgaagtagtcgataactctatcgatgaagccttagcgggccattgtactgatatc
acaattactatccatgtggatggttcggtttctgttaaggatgatggccgtggtattccg
gtctctatccatgaagaagaaggtgtatcggccgcagaagttatcatgacggtactgcat
gctggtggtaaattcgacgataactcctataaagtgtcaggtggtctgcacggtgtgggt
gtgtcggtggtcaacgcgctttctaaaaagctgcaattaaccattcgccgcgatggtaaa
gtccacgagcagttttacacccatggtgtacctgatgcgccaatcaaagagattggtgat
gcaactaaaacgggtaccgaaatccgtttctggccaagtgagcaaactttcagtgatgtt
gagtttcactttgaaatcctggctaaacgggtgcgagaactatcgttccttaactctggt
gtggggattcgcttagtcgacgagcgtgataataaaaacgaattctttaaatacgaaggc
ggtatcagcgcattcgttgattacttgaaccgtaataaaacgccggtaaacaaagatgta
ttccactttatgcaggagcgtgacgacggcattaccgttgaagtggcgatgcagtggaac
gatggttaccaagaaaacatattctgttttaccaacaacatcccgcagcgtgacggtggt
actcacttagccggtttccgtagtgcgttgacacgtaacctcaacaactacatggaaaac
gaaggttataacaagaaaggcaaaaccaacgcgactggcgatgacgcccgcgaaggttta
acggctgttatctcggttaaagtgcccgatcctaagttcagctcgcaaaccaaagacaag
ctagtgtctagcgaagttaaagccgcggttgaacaaaccatgggtgaaaagctaaacgac
tatctgcttgaaaatcctgccgatgctaagttaatcgttggtaagattgtggatgcggct
cgtgcccgtgaagcggcgcgtaaagcccgtgaaatgacccgtcgtaaaggcgcgctcgat
ttaggtggtttgcctggtaagctggcggattgccaagagaaagaccctggtctttcagaa
atctacatagtggaaggggactctgctggcggtagtgctaagcagggacgcaatcgtaag
aatcaagcgattctgccactgaaaggtaaaatcttaaacgttgagaaagctcgtttcgat
aaaatgctttcctctcaagaggttgcaacactaatcaccgcacttggctgtggtattggt
cgtgatgaatacaaccccgataagactcgctaccacaacattatcatcatgacggatgct
gacgtcgacggctcgcacattcgtaccttgctgttgaccttcttcttccgccaaatgcct
gaactgattgagcgtggttatgtgtatattgctcagccgcctttattcaaagtgaagaaa
ggtaagcaagaacaatatctgaaagacgaagcggcactgactcagtatctgaccactcaa
gcgttagatggaaccagcatttatccatctcaaggtgcgccaggtatgtcgggtgagcca
ttagagcgtttagtgacgcaataccgcgaagtagaagcgattgttgcccgtttagagcaa
cgttatccaacccatatcactaatcggatgctttaccacccaatgatcagcaatgagatg
ttggccgatgaagctaagatgaaggaatggatagacgcctttatccatgagttggtggaa
ttagaaaacagcggcgtgctgtattctggtgagcctgtactcgatcctgagcgtaaagtg
tatctgccaaagatcaccattcgtaaacatggtatcgacacgcattacctatttagctat
gacttcttccaatcaatggattatcaacgtattgctaagttaggtgcagccctagaaggc
ttgattgaagtcggtggttatgtgcaacgtggcgaccgagtgaaagaagttggtagcttc
attgaagcactagattggactatttctgaagctaaacgtggtttatatatccaacgttat
aaaggattgggtgagatgaaccctgagcaattgtgggaaaccacaatggatcctgaatca
cggcgtatgctgcaagtgaccattgatgacgccgtcggcgcagaccaattgtttacttgc
ttgatgggcgatcaagtagaacctcgtcgtgagtttattgaagccaacgcgctgaacgta
gctaacttagacgtttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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