KEGG   Spiroplasma helicoides: SHELI_v1c00560
Entry
SHELI_v1c00560    CDS       T04620                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
shj  Spiroplasma helicoides
Pathway
shj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:shj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SHELI_v1c00560 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shj03021]
    SHELI_v1c00560 (rpoC)
   03400 DNA repair and recombination proteins [BR:shj03400]
    SHELI_v1c00560 (rpoC)
Enzymes [BR:shj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SHELI_v1c00560 (rpoC)
Transcription machinery [BR:shj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SHELI_v1c00560 (rpoC)
DNA repair and recombination proteins [BR:shj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SHELI_v1c00560 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AOG60011
UniProt: A0A1B3SJA0
Position
55937..59692
AA seq 1251 aa
MGINKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTKNYECSC
GKYKKVKNKGKVCERCNVEITETIVRRERMGHIELEEPVTHIWMLKVVPSRIASILDLKT
KEVEEVVYFVSHVVLDAGGSRHLERGQVLDLGNAKASLKTREKLLKTLEDIKADLDEETR
DWRRADNLITQLKSQTPFSMDEAATFMSRLIGAKFGIGASAIEELLKGIDLDKEITKLKD
KLKENKGSTEQNKMMKRLEVLDSLKKSQARPEWMVLHVIPVIPPDIRPIIQLDGGRFTTS
EINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDKRA
LKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFVIR
RLQERDFAENVKVAEKMILANDTKVWDVLEEVIKDRPVLLNRAPTLHRLGIQAFEPKLVK
GKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSSAILGPKDGKPIVTPT
QDMILGNYYISTEEKETEANGIKGQGTLFSSCEEAKIAYENDVVSLNAIVAIPVNVLHNK
MFKPEHQDKYLITTVGKILFNEMFNEEFPWIINSNILNAESEVEKFLVDSNTNVREYIEK
DYEIQQPIKKKELSLIIERYFKTYGAQKTAQMLDNMKNLGFKFSSKSGTTISAADVVAFE
EKNEEFKIADEKVSQINEYYEQGMLTKSEKKRRVIAIWSQVKDKIQSKLESVLKRDLKNP
VFVMADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARK
GMADVALKTADSGYLTRRLVDISQEIIVTQEDCNASKGFNVYEIIDTKHNNTIVPLRDRL
VGRYSFEDVEDLKGNIIVPKNTLFTAALADDVITAGVTDVKIRTVLTCETNRGVCRKCYG
INLATGNEVSLGEPVGVVAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVT
TPKGSIAIISQIDGVVTEVKEDGIITIVVKSENDERKYKSQYGAISRVQVGDKVKRGKKL
TEGAINIKELLEVARVEDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKIIDSG
ETSLLPGEIISEKTFKEEVLQAILENRKPPLAKYVIFGIKKAPLESDSWLSSASFQDTAR
VLVKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSEDIIKKGKEVLKLEY
NT seq 3756 nt   +upstreamnt  +downstreamnt
atgggtataaataaaagaatgattaaaatagaattagcttcaccagatgttattagaagc
tgatcacgtggtgaggttaccaaacctgaaacaatcaactataaaactttaaaaactgaa
aaagaaggtctttttgacgaaagaatttttggaccaaccaaaaactatgaatgtagttgt
ggtaagtacaagaaagttaaaaataaaggtaaagtttgtgaacgttgtaatgttgaaatt
acagaaacaattgttagacgtgaaagaatgggtcacattgaattagaagaaccagtaact
catatttgaatgttaaaagtcgttccttcaagaattgcttcaatattggatttaaaaact
aaagaagttgaagaagtagtttattttgttagtcacgttgttttagatgctggaggatca
agacaccttgaaagaggacaagttttagatttaggtaatgctaaagcaagtttaaaaact
agagaaaaacttttaaaaactttggaagatattaaagctgatttagacgaagaaacaaga
gactgaagaagagcagacaatttaattacacaattaaaatcacaaactccattttcaatg
gatgaagcagcaacatttatgtctagattaattggtgctaaatttggaattggcgctagt
gctattgaagaacttttaaaaggtattgatcttgataaagaaattacaaaattaaaagat
aagttaaaagaaaataaaggatcaacagaacaaaacaaaatgatgaaacgtttagaagtt
cttgattcattaaaaaaatctcaagcaagaccagaatgaatggttcttcacgtaattcct
gttataccaccagacattagaccaattattcaacttgatggtggaagatttactacatca
gaaataaatgacttatacagaagaatcattattagaaatgaacgtctgaaaaaagttaaa
tcaatgggtgcaccaagtattattgttaacaacgaaaaacgtatgttacaagaagctgtt
gatgcattactagataatgagcgtaaaccaagaccagtaacaggtaaagataaaagagca
ttaaaatcattgacatcaattttaaaaggaaaacaaggaagattccgtcaaaacttactt
ggaaaacgtgttgactactcaggtcgttcagttattgctattggaccagatctaaaaatg
tatcaagcaggtattcctagagatatggctatcacattgtttaaaccatttgtaattaga
agattacaagaaagagactttgcagaaaatgttaaagttgctgaaaaaatgattttggct
aacgacacaaaagtttgagatgttttagaagaggttattaaagatagaccagttctttta
aaccgtgctcctactttacaccgtttaggtattcaagcatttgaacctaaattagttaaa
ggtaaagcaattcgtcttcacccacttgttacaactgccttcaacgctgactttgatgga
gaccaaatggctgtccacttaccaattagtgatgaagctgttgctgaagcaagagcttta
atgcttggaagtagtgcaattcttggtccaaaagatggtaagccaattgttacaccaact
caggatatgattcttggaaactactatatttcaactgaggaaaaagaaactgaagcaaat
ggtattaaaggtcaaggaacattattctcaagttgtgaagaagcaaaaattgcttatgaa
aatgacgttgtttcattgaatgcaatagttgcaattcctgtaaatgttttacataataaa
atgtttaaaccagaacatcaagataaatatttaattactacagtaggtaaaatattattc
aatgaaatgtttaacgaagagttcccttgaattattaacagcaatattttaaatgctgaa
tcagaagttgaaaagttcttagttgactcaaatacaaatgttagagaatatattgagaag
gattatgaaatccaacaaccaattaagaaaaaagaactttcattaataattgaaagatac
tttaaaacttatggagcacaaaaaactgcacaaatgttggataacatgaaaaacctagga
tttaaattttcttcaaaatcaggaactacaatcagtgccgctgacgttgttgcctttgaa
gaaaaaaatgaagaatttaaaatcgcagacgaaaaagtttctcaaatcaacgaatactat
gaacaaggtatgcttacaaaatctgagaaaaaacgtagagttattgcaatttgatcacaa
gtaaaagataaaattcagtcaaaactggaatcagttctaaaaagagatttaaaaaaccca
gtgtttgttatggctgattctggagctcgtgggaatgtgtcaaactttactcaacttgtt
ggtatgagaggacttatgaatgaccctaaaggggacattaaagaaattccgattaaatca
tcatttagagaaggacttacagtgtcagaatactttatttctacccacggggcaagaaaa
gggatggccgacgttgccttaaaaaccgctgactcagggtatttaacaagaagacttgtt
gatatttcacaagaaatcattgttactcaagaggattgtaacgcgtctaaaggatttaat
gtttatgaaattattgacacaaaacacaacaacacaattgtgccattaagagacagattg
gttggaagatattcttttgaagatgttgaagatttaaaaggaaacattattgttcctaaa
aatacattattcacagctgcattagcagatgatgttattacagccggagttactgatgta
aaaattagaacagtgttgacttgtgaaacaaaccgtggggtatgtagaaaatgttatgga
attaatcttgctacaggtaacgaagtttcgcttggagaaccagttggggtagttgctgct
cagtcaattggtgaacccggtacacagctaaccatgcgtacattccataccggtggggtt
gctgggggagcagatattactcaaggacttcctcgtattaaagaacttcttgacgttaca
acaccaaaaggatcaatagcaattatttcacaaattgatggtgttgttacagaagttaaa
gaagatggaataattacaattgttgttaaatctgaaaatgatgaaagaaaatacaaatca
caatatggagctatatcaagggttcaagttggagataaagtaaaacgtgggaaaaaactt
actgaaggagctattaatattaaagagctactggaagttgcaagagttgaagatgtacaa
aactacattttaaaagaagtgcaaaaagtttatcgtttacaaggtattgaaatttcagac
aaatatattgaaatcatcattaaacaaatgttaaacaaagtaaaaataattgattcagga
gaaacaagtttattaccgggagaaattatttcagaaaaaacattcaaagaagaagtttta
caagctattttagaaaatagaaaaccacctttagcaaaatacgtaatctttggtattaaa
aaagcacctttggaatcagattcatgattatcaagtgcttcattccaagatacagctcgt
gtcctagttaaagctgttataaaaggaaaagttgacaaactagaaggtttaaaagaaaac
atcatgttaggaaacttaattcctgcaggaacaggattaactggatctgaagacataatt
aaaaaaggaaaagaagttttaaaattagaatattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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