KEGG   Shewanella halifaxensis: Shal_3705
Entry
Shal_3705         CDS       T00654                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
shl  Shewanella halifaxensis
Pathway
shl02020  Two-component system
shl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:shl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Shal_3705
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Shal_3705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shl03021]
    Shal_3705
Transcription machinery [BR:shl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Shal_3705
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: ABZ78245
UniProt: B0TUX8
Position
4503961..4505424
AA seq 487 aa
MKASLQLKMGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELDEEQSDGDMLN
DEDQSSSNSDSELIQDSASVETSDALTQDSMPDELPMDTTWDEVYTVSSNASSGVSREDD
MPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQSCDEILEAMGDPE
TELDEVEAVLKRIQHFDPIGVAARNLSECLLIQLAQYAADTPHIDNARLLIKDYLDLIAG
RDFRQLMRKTKLKEDDLRDAITLIQTLNPRPGLAIARSKDEYVIPDVSVSKKKGRWVVEL
NPDYMPKINVNQHYASMARSTTNQADGQFIRGHLQEAKWFIKSLESRNDTLLKVTNCIVK
FQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVGT
DDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKYREAMLIPP
SNQRKSL
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgaaagcgtcactccagctcaaaatgggtcaacagctcaccatgactccccagttacag
caggctattcgcctgttacaactgtcttctttagagctgcaacaagagatccaacaagca
ttagattctaatccgctactggagttagatgaagagcaatcagacggcgacatgctcaac
gatgaagaccagtcttcaagtaactccgatagtgagctaatccaagatagcgcaagcgtt
gaaacctctgatgccctaacccaagactccatgcccgatgagctaccgatggataccact
tgggatgaagtctataccgtctcctcgaacgccagctcaggcgtgagtcgtgaagatgat
atgccttttcagggtgagactagcgaaggattatacgagcaccttgaatggcaaaagaat
ctcactccattttcagataatgaccttgctatcgcgactgcaattatcgatgcaatcgac
gagcggggttatttaactcaaagctgtgatgagatcctcgaagcgatgggcgacccagag
actgaactcgatgaggttgaggccgttttaaaacggattcaacatttcgaccctatcggc
gttgccgcgcgtaatctaagcgaatgtctacttatccaacttgcgcagtatgcagccgat
actccccatatagataacgctagattactgattaaagactatttggaccttattgctggc
cgtgattttaggcagctgatgcgtaaaaccaagctcaaagaagatgacctgcgtgatgct
atcacactgatccaaacgctcaatccaagacctggtctcgcaatagcccgcagtaaagat
gaatatgtcatcccggatgtgtctgttagcaagaaaaaaggccgctgggtggtggagcta
aaccctgactatatgcctaagattaatgttaaccagcattacgcttctatggcacgcagc
acgactaatcaggccgatggacagtttattcgcggccaccttcaagaagcaaagtggttt
attaagagccttgaaagccgcaatgacaccttattaaaggtaacaaattgtatcgttaaa
tttcagcaaggcttttttgagtacggcgaagaagccatgaaacctatggtattaaatgac
attgccgaagccgttgaaatgcatgaatccaccatttcacgggttaccacacaaaaatat
atgcataccccaaggggtattttcgaactcaagtatttcttctcgagccatgtcggtaca
gacgacggcggagagtgctcatctacagcaattagggcgtttattaagaagttagtcgct
gctgaaaaccagaagaaaccattaagcgacagcaaaatggcccaacttctggcggaacaa
gggattaaagtagctagacgtactatcgcgaaataccgcgaagcaatgctgatcccaccc
tcaaaccaacgtaagagtttataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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