KEGG   Shewanella sp. MR-7: Shewmr7_2693
Entry
Shewmr7_2693      CDS       T00389                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
shm  Shewanella sp. MR-7
Pathway
shm03030  DNA replication
shm03430  Mismatch repair
shm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Shewmr7_2693
   03430 Mismatch repair
    Shewmr7_2693
   03440 Homologous recombination
    Shewmr7_2693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shm03032]
    Shewmr7_2693
   03400 DNA repair and recombination proteins [BR:shm03400]
    Shewmr7_2693
Enzymes [BR:shm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Shewmr7_2693
DNA replication proteins [BR:shm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Shewmr7_2693
DNA repair and recombination proteins [BR:shm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Shewmr7_2693
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon DUF655 tRNA_anti_2
Other DBs
NCBI-ProteinID: ABI43678
UniProt: Q0HT77
Position
complement(3185302..3188778)
AA seq 1158 aa
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVAGRVVIDQEW
LVTYNEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRPDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLDASQLNPSVLESIEQSISPWRNGAVPVVINYSQAQAKGQFRLAEHWRVNPSDEL
VFALESLLGPNKVRILFP
NT seq 3477 nt   +upstreamnt  +downstreamnt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgtccgatggt
gtggctaaggtcaaacccatcctcgcccaagttgaggctaagggtatggctgcggtggcc
ttaacggatcaaaacaacctctgcggtctggtcaagttttatggtggttgccatggtgcg
gggattaagccgattattggcgcggacttttggatgcaagtgccggggtttgatgacgag
ttttgtgccttaaccattattgcgatgaataatgatggctatcaaaatctcacccaaatc
atcagccaagcctatctacggggccatgtggctgggcgggtggtgattgaccaagagtgg
cttgtcacctacaacgaaggcattttattgctgtctggtgggaaagaaggggacgtgggt
aaggcgctgcttaagggcaacaatactcaagtcgagtccttatgcgagttttatcagcaa
cattttgaagggcgttattacctcgaattattgcgcacggggcgccctgatgaggagcgt
tacctgcatatggcggtggggctcgcgcaggaaaagggcattcccgtggtcgccaccaat
caggtggtatttttaaaacccgaagacttcgaggcccatgagatccgcgttgcgatccac
gatggttttacgcttgccgatccccgccggcctaaaaaatacagcgagcagcagtacctt
cgcagtgaagaggaaatgtgcgagctgtttgctgacattcctgccgcgctcgaaaatacc
gttgaaatcgccaagcgttgcaacgttaccattcgcttatacgaatacttcttaccgaat
ttccccaccggcgatatgtcgattgaggattttctagttgattgctctaagaaggggctc
gaagagcgtttagagttcttattccccgatccacaagtgcgcgccgagcgccgcggtgaa
tatgacgagcgtctcgatgtggagcttaaggttatcaaccagatgggcttccccggttac
ttccttatcgtaatggagtttatccagtggggtaaggataacggcattcctgtggggcct
ggccgtggttcgggcgctggctcgcttgtggcctatgcccttaagattaccgacttagac
cccttagaattcgacctgctgttcgaacgtttcttgaacccagagcgggtatctatgccc
gacttcgacgtcgacttctgtatggatagacgcgatgaggtgattgaccacgtggccgaa
ctctatggccgtgaggcggtatcacagatcattacctttggtaccatggcggccaaggcg
gttatccgcgacgtgggtcgtgtactcggccatccctatggctttgtggaccgcatttct
aagcttattcctccagagcctggcatgacactcgccaaggcctttgaggtggaacctgcg
ctgcaggagtcctacgatgccgatgaggatgtgaaagatcttatcgacatgtgccgtaaa
ctcgagggggtgacccgtaacgccggtaagcatgcggggggcgtggtgattgcgcccacc
aagatcaccgacttctcgccgctttattgcgacgccgaaggtaaaaacccggtaacccag
ttcgataagaacgacgtggaaaccgccggcttagtcaaattcgacttcttagggttaaga
accctcaccatcgtcgactgggcgctggagatgatcaacaaggtggaggttaaaaacggc
cgtccaccggtgcggattgaggcgattcccctagacgacccagcttcgttccgcttgctg
caacgctatgaaaccaccgcggtattccagctcgaatcccgtggtatgaaggatttgatt
aagcgtctgcaacccgactgtttcgaagatatgatcgcactcgtggcattgttccgcccg
gggcctctgcagtcgggcatggtggataactttatcgagcgtaagcatggtcgtgaagag
gtgtcttaccctgattctcaataccagcatgaatccttgaaggagctgttgtcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtgctatcgggttat
accttaggcggcgcggacatgctgcgccgcgctatgggtaagaaaaagcccgaggagatg
gccaaacagcgcggtacctttaaagaaggggcgattaagaacggcgtcgatggcgagttg
gcgatgaaaatcttcgacttagtggaaaagtttgcgggctacggctttaacaaatcccac
tccgctgcgtacgcgctcgtgtcctatcaaaccctgtggctcaagactcacttcccgtcg
cagtttatggcggcggtaatgtctgccgatatggacaacacagacaaaatcgtcacccta
gtggatgaatgtgagcgcatgggactcaccattattccgccggatgtgaacaaaggtctg
tttaagtttaccgtcgatgatgatctgcgtatcgtttacggcatcggcgccatcaaaggt
gtgggtgaggggccggttgagtcgattcttgaggcgcgtaaggacggcccctttaaagat
ttattcgacttttgcgcccgtatcgatcttaaaaaacttaacaaacgggtgattgaaaag
cttatctgcgcgggtgccttagatgcgcttgggccgcaccgcgcctctatgatggccacc
ttgcccgaggcgataagcgccgccgatcagcatgcgaaggccgaggccattggccagcat
gatatgtttggtctgcttaacagtgaccctgaggacagcaagcaacagtttgtcgaatgc
actccgtggcccgataaaatttggctcgaaggggagcgtgagaccttaggtctatattta
actggtcacccgattaatcaataccttaaagagcttaagcattacacctctgggcgctta
aaggatgtgcatccaaccgatcgcggcaaaaccgtgaaggcggcaggccttgtggttgca
actcgggtgatgctcactaagcgtggatcgaaaatgggcctgctgacgctagatgacaag
agtgcacgcctcgaggtgatgctctttaccgaagcttttgagaagtttaaccatctgctc
gagaaggacaggatcctgatctgcgaaggtgaagtcagcttcgatgattttgccggtggc
aaccgcatgacggcgcgcaatattatcgatatcagcgaggcgcgcagccactttgccagc
gccttagaaatcgatttagacgcatcgcagttaaatccaagcgtgctcgaaagtatcgag
caatcgataagcccgtggcgcaacggtgccgtacccgtggtgattaactacagtcaagcg
caggccaagggccaatttaggttggcggaacattggcgagtcaaccccagcgatgaattg
gtttttgcccttgagagcctcttggggccaaataaggtgcggatcctgttcccctaa

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