KEGG   Shewanella sp. ANA-3: Shewana3_0672
Entry
Shewana3_0672     CDS       T00428                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
shn  Shewanella sp. ANA-3
Pathway
shn02020  Two-component system
shn02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:shn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Shewana3_0672
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Shewana3_0672
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shn03021]
    Shewana3_0672
Transcription machinery [BR:shn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Shewana3_0672
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: ABK46910
UniProt: A0KSZ1
Position
complement(791964..793439)
AA seq 491 aa
MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPTER
KQDIADTDFSETTAQPQEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSGAS
REDDMPFQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDILEAM
GNPEIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFALDTPHLENARMLIKDHLD
LIAARDFRLLMRKTKLKEDELRESIALIQTLNPRPGLLITPVDEEYVIPDVSVSKKNGRW
VVELNPDCMPKINVNQQYAAMARSTKSQADSQFIRGHLQEAKWFIKSLESRNETLLKVAN
CIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYFFSS
HVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYREAM
LIPPSNQRKSL
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgaaagcgtcactccagctcaaactgggtcaacagttaaccatgacgccacaacttcaa
caggccattcgtctgttgcaactgtcgtcattggaactgcagcaagagatccagcaagcc
ttagactctaatcctcttcttgagctggaagaggagcaattcgacgcgcctaccgaacgt
aagcaagatatcgccgataccgactttagcgaaacgacagctcagccacaggaacaagat
aattccaccgtggacattgccgagtcgttgaccaaagaatccctgcccgaagaactaccc
atggacaccacttgggatgaagtctttaccgcatcgccaaactcaggttctggcgccagc
cgtgaagatgacatgcccttccaaggggaaaccagtgaaggcctgtacgaacatttagaa
tggcagaaaaacctcacgcccttctctgaaaccgatttagctattgccaccgcgattatt
gatgccatcgacgatcaaggttatctgactcaaagtactgaagatatcctcgaggccatg
ggcaatcctgagatcgagctggatgaagtcgaagccgtactcaagcgcattcaacacttc
gatcccgtcggtgtcgccgcaagggatttaagcgaatgtctgcttatccaactctctcac
tttgcgctggataccccacacctcgaaaacgcccgcatgttgatcaaagaccatttagat
ctgatcgccgcccgcgactttagattgttgatgcgtaagaccaaactcaaagaggacgag
ttaagggaaagcatagcgctgatccaaaccttaaatcctcgccccggtttgctcatcact
cctgttgatgaagaatatgtcatccccgatgtatcagtgtcgaagaaaaatggtcgctgg
gtggtcgagttaaatccagactgcatgccaaaaatcaatgttaatcagcaatatgcagcc
atggcgcgcagtaccaaaagccaagccgatagccaatttatccgcgggcacctgcaagaa
gccaagtggtttatcaaaagccttgaaagccgtaacgaaacactgctcaaggtggcaaac
tgcatagtgcaatatcaacagggcttcttcgaatacggtgaagaagccatgaaacctatg
gtcctaaacgatatcgccgaggcggtagagatgcatgagtccaccatttcacgggtgacc
acacaaaaatacatgcataccccaaagggactttttgaactaaaatatttcttctcaagc
cacgtcgggactgatgatggcggtgagtgctcatccacggcaatcagagccttcattaag
aaactggttgcagcggaaaaccagaaaaaaccattaagcgacagcaagatggcgcaactt
ctggcagaacagggaattaacgttgcgcgcagaaccattgcgaagtaccgagaggcgatg
cttattcccccttccaatcagcgtaaaagtttatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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