KEGG   Shewanella putrefaciens 200: Sput200_0158
Entry
Sput200_0158      CDS       T02015                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
shp  Shewanella putrefaciens 200
Pathway
shp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sput200_0158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shp03021]
    Sput200_0158
   03400 DNA repair and recombination proteins [BR:shp03400]
    Sput200_0158
Enzymes [BR:shp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sput200_0158
Transcription machinery [BR:shp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sput200_0158
DNA repair and recombination proteins [BR:shp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sput200_0158
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: ADV52647
UniProt: E6XQ81
Position
179919..183950
AA seq 1343 aa
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMA
LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKDISTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVI
TDEVEYLSAIEEGRYVIAQANIEVDANGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAK
RGGYIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCAVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD
LSEEFKILEEGVLSRARNLLLGAGFTETQIAAMPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQRELA
EVRGYIKQVYELGDEVQQRVDIDSFTDDEVMRLAQNLKGGIPIATPAFDGAKEKEIKQML
ELAGLPTSGQLKLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq 4032 nt   +upstreamnt  +downstreamnt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtcttgaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgcggtgttacgtattcagcaccactacgcgttaaatta
cgcatggtgttgtatgaccgtgaagcagcggcaggcactgtaaaagatattaaagagcaa
gaagtctacatgggcgatatcccattgatgacggataacggtacctttgttatcaacggt
actgagcgtgtaatcgtatctcaattacaccgtagccctggcgtgttcttcgatcatgac
cgtggtaaaacccactcatcgggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatcctaaagatgcacttttcgtacgtattgaccgt
cgtcgtaaattaccagcgaccatcattctgcgtgcattagaatactctactcaagagatc
ctcgacctgttcttcgaacgtgttgagttcaagatcaagaaagatacgttagtcatggcg
ttagttcctgagcgtctgcgtggcgaaactgccagctatgacatcaaggatgctgaaggt
tctgtgctggttgaagcgggccgtcgtattactgcgcgccatattcgccagttagaaaag
actaataccactgaactcgaagtgccagttgaatatatcgtgggcaaatatgctgctcaa
gattatatcgatccggacacgggtgaagttttagtgtctgcaaacagtgaaatcagctta
gaagacttagcgaaattatcactggctggcattaaagatatcagcacgttgtatatcaac
gagctagatcatggtgcttatatttcagatacgctgcgtatcgattcaaccactaaccgc
ttagaagcgctggttgaaatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gcggcagaagcactattccagaacttgttcttcagtgaagaacgctatgacctgtctaaa
gtcggtcgtatgaagttcaaccgtcgtctgagcatccccgatgacgaaggtagcggtgta
ttgtctaaagaagacatcgtcgcggtaatgaagaacatcattcatatccgtaacggtttc
gacgaagtcgatgacatcgatcacttaggtaaccgtcgtattcgtagcgtcggtgaaatg
gctgaaaaccaattccgtgttggtttagtccgtgttgagcgcgccgtgcgtgaacgtcta
tctttaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtcacgcataagcgtcgtatttctgctcttggccctggaggtttgact
cgtgaacgtgcaggcttcgaagtccgtgacgtacatccaacgcattatggccgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcaagttttgcc
cgtactaactcatacggcttcttagaaacgccataccgcaaggtgattgacggcgtgatt
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttatgtcattgcacaggca
aacatcgaagttgatgcaaatggccgcatggttgaagagcagatcgcctgtcgtcataaa
ggtgaatctacctttatgcgcgcatctgatattcaatacatggacgtatcgccacaacag
attatttctgttgctgcatcactgatcccgttcttagaacacgacgacgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagccgtacccacactgcgctctgaaaagccgtta
gtcggtactggtattgaacgtacgctagctgttgattctggtgtagtagttgttgctaag
cgtggtggttatatcgactacgttgatgcgagccgtatcgttgttaaagtcaatgaagat
gagctacgtccaggcgaagcgggtatcgacatttataacctgactaaatacacccgttct
aaccaaaatacttgtatcaaccagcgcccttgttgtgccgttggtgagccagtagttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagctcttggccagaac
atgcgcatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgcgtagcacaggaagaccgcttcaccactatccacatccaagagctgtcttgtatt
gctcgtgataccaaactgggtagcgaagaaatcaccgctgatattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgaatcaggtatcgtttatattggtgcagaagtgaagggt
ggcgatattctggtcggtaaagtgacgccaaaaggcgaaactcagctaacaccagaagag
aagttactccgtgctatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaagggcactatcatcgacgttcaggtatttacccgtgacggcgtt
gaaaaagataaacgtgcagttgaaatcgaagagatgcacatcgctcaagcacgtaaagac
ttaagcgaagagttcaagatccttgaagaaggtgtattgagccgtgctcgtaacctattg
ttaggtgcaggttttacagaaacacaaatcgcagcgatgccacgtaaggatgtattggtt
caagttattgacgatgaagcaaaacaaactgaacttgagcaattagctgagcagcatgaa
gagctgaaagcagacttcgataagaagtttgaaattaaacgtcgcaagatcacccaaggt
gatgacttggcgccaggcgtactgaagatcgttaaggtttacttagcggttaagcgtact
atccaacctggtgacaagatggcgggtcgtcatggtaacaaaggtgttatctctaagatt
tgcccaatcgaagacatgccatatgacgaacaaggtaacccagtagacatcgtattgaac
ccactaggtgttccgtcacggatgaacattggtcaggtacttgaagtccatatgggcgcc
gccgctaaaggtattggtaacaagatcactgcaatgcttgaagaacagcgcgagctggct
gaagtacgcggttacatcaagcaagtgtatgagttaggtgacgaagtgcagcagcgcgtc
gatatcgattcattcaccgatgatgaagtgatgcgtcttgcccaaaacttgaagggtggt
atcccgattgcgactcctgcattcgacggtgctaaagagaaagagatcaagcagatgctt
gagcttgcaggcttgccaacctctggccagctgaagttgtatgatggtcgtaccggtaac
gaatttgagcgtcaagtaaccgttggttacatgtacatgctcaaactgaaccacttagtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaaccactg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcactagaa
gcatacggtgccgcttatacgcttcaagaaatgctcaccgtgaaatcggatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcaacctggcatg
ccagagtccttcaacgtgttactgaaggagatccgttcactcggtattaatatcgagttg
gatcaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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