KEGG   Shigella sp. PAMC 28760: A0259_17705
Entry
A0259_17705       CDS       T04390                                 
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
shq  Shigella sp. PAMC 28760
Pathway
shq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    A0259_17705 (recB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shq03400]
    A0259_17705 (recB)
Enzymes [BR:shq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     A0259_17705 (recB)
DNA repair and recombination proteins [BR:shq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     A0259_17705 (recB)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_11 BscB_a-b AAA_25 Cas_Cas2CT1978
Other DBs
NCBI-ProteinID: AMR24349
Position
complement(3570867..3574409)
AA seq 1180 aa
MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA
GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS
AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL
MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL
NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE
MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIY
LFLRGVDKEHPQQGIYTTRPNAGLIDLMDEMFAGMTLEEA
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgagtgatgtcgccgagacactagatcctttgcgcttgcccttacagggtgagcgcctg
attgaagcctctgccggcacaggcaaaacctttacgattgcggcgctctatttgcgcctg
ttacttggactaggcggttccgccgcctttccccgcccgctgaccgttgaagaactgctg
gtggtcacctttaccgaggctgccacggcagaattgcgtggtcgtatccgtagcaatatc
cacgagttgcgcatcgcctgtctgcgtgaaaccaccgacaatccactgtacgaacgcctg
ctggaagagatcgacgataaagcgcaagccgcgcagtggttgttgttagccgaacggcag
atggatgaagcggcagtctttactattcacggtttttgccagcgcatgctcaacctgaat
gcctttgaatccggtatgctgtttgagcagcagctgattgaagatgagtctctgctacgc
taccaggcctgcgccgatttctggcgtcgccactgctacccgctgccgcgtgaaatagcc
caggtcgtctttgaaacctggaaagggccgcaggcgttgctgcgcgatattaatcgttat
ctgcaaggcgaagcgccggttatcaaagcaccgccgcccgatgatgaaacgttggcttcc
cgccacgcgcaaattgtggcgcgtattgatacggtaaaacagcagtggcgcgacgcagtg
ggtgaactggatgcgctgatcgaatcttctggtattgatcgacgcaagtttaaccgtagc
aatcaggctaaatggatcgacaagatcagcgcctgggcagaagaagagaccaacagttat
cagttgccagagtcgctggaaaaattctcccagcgtttcttagaagatcgcacgaaagcc
gggggggaaaccccgcgacatccactgtttgaggcgatcgatcaactgcttgcagaacca
ttgtcgatccgcgatctggtgatcacccgcgcattggctgagatccgcgaaacagtagcg
cgtgaaaaacgccgccgtggcgaattgggttttgatgacatgttaagtcggctcgattcc
gcgctgcgtagcgaaagcggtgaggtgttggcagcggcgatccgtacgcgattcccggtg
gcaatgatcgatgaatttcaggataccgacccccagcagtaccgaatttttcgccgtatc
tggcaccatcagccggaaaccgcattgttgctgattggcgacccgaagcaggccatatat
gcattccggggtgcggatatcttcacttatatgaaggcgcgtagcgaagttcacgcccac
tacactttagacaccaactggcgttccgcaccaggaatggtgaacagcgtgaataagctt
ttcagccagactgatgacgcgttcatgtttcgcgaaataccgtttattccagtgaaatca
gccgggaaaaatcaggcgttacgttttgtatttaaaggtgaaacacagcctgcgatgaaa
atgtggctgatggaaggcgaaagctgcggcgttggcgattatcaaagtaccatggcgcag
gtatgtgctgcgcaaatccgcgactggctacaagccggacagcggggcgaagcgttgctg
atgaacggcgacgacgcgcgtccggtgcgtgcttcggacatcagtgtgctggtgcgcagc
cgccaggaggccgcccaggtgcgcgatgccttaacgttgctggaaatcccttccgtttac
ctttcgaaccgcgacagtgtttttgaaactctggaagcgcaggaaatgctttggttgttg
caggcggtgatgacgcccgaacgtgagaacaccctgcgtagtgcgctggcaacgtcaatg
atggggctgaacgcgctggatatcgaaacgctgaacaatgacgaacatgcgtgggatgtg
gtagtcgaagagttcgatggttatcggcaaatctggcgcaaacgtggcgttatgccgatg
ctgcgggcgctgatgtcggcgcgtaacattgctgaaaacttgctggcaacggcaggcggt
gagcggcgtcttaccgatatcttgcatatcagcgaactgctacaagaagccggaacgcag
ctggaaagtgaacatgcgctggtacgctggttatcgcaacatatcctcgagccagacagt
aatgcctccagccaacaaatgcgtctcgaaagtgataaacatctggtgcagattgtcacg
atccacaaatcgaaagggctggaatatccattggtctggctgccgtttatcaccaatttc
cgcgtccaggagcaggcgttttatcacgatcgccactcgtttgaggcagttctggatctt
aatgctgcgccagaaagcgtcgacctcgcggaggccgaacgtctggcggaagatctgcgt
ttgctttacgtggcgctgacgcgttcggtttggcattgtagtctcggcgttgcaccgctg
gtgcgccgtcgtggcgataaaaaaggtgacaccgacgtccaccaaagtgcgctcgggcgt
ttgctgcaaaaaggggaaccgcaagatgcggcagggcttcgcacctgtattgaagcattg
tgcgatgatgatattgcctggcaaacggcacaaattggtgataaccaaccctggcaggtt
aatgatgtttctacagcagagctgaatgcgaagacgttacaacgattgcccggcgataac
tggcgcgtcaccagctactctggtttgcaacagcgtggtcacggtatcgcccaggatttg
atgcctcggctggatgtcgatgctgcaggcgttgccagcgtcgttgaagaaccgacgtta
acaccacatcagtttccgcgcggtgcgtcaccggggacgttcttgcacagtttgtttgaa
gacctggattttacccagccggttgacccgaactgggtgcgggaaaaactggaactcggc
ggctttgaatcgcagtgggaaccggtattgaccgagtggatcacggctgtcctccaggca
cctctcaatgaaaccggcgtaagcctgagtcaactttccgcccgcaataaacaggtggag
atggagttttatctgccgattagtgaaccgcttatcgccagtcagcttgatacgttaatc
cgccagtttgacccgctatccgcaggctgcccgccgctggagttcatgcaggtacgtggc
atgttaaaaggctttatcgacctggtgttccgccacgaagggcgttattacctgctcgac
tataaatccaactggttgggtgaagacagttcggcttacacccaacaggctatggcagca
gcgatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgt
tatctgcgccatcgcattgctgattacgactatgatcgtcactttggcggcgttatctat
ctgttcctgcgtggcgttgataaagaacatccgcaacaggggatttacacaacccgaccc
aatgcagggttgattgacctgatggatgagatgtttgccggtatgaccctggaggaggcg
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system