KEGG   Sarcophilus harrisii (Tasmanian devil): 100914664
Entry
100914664         CDS       T02286                                 
Symbol
GTF2H1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03022  Basal transcription factors
shr03420  Nucleotide excision repair
shr05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100914664 (GTF2H1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100914664 (GTF2H1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100914664 (GTF2H1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shr03021]
    100914664 (GTF2H1)
   03400 DNA repair and recombination proteins [BR:shr03400]
    100914664 (GTF2H1)
Transcription machinery [BR:shr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100914664 (GTF2H1)
DNA repair and recombination proteins [BR:shr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100914664 (GTF2H1)
SSDB
Motif
Pfam: PH_TFIIH BSD
Other DBs
NCBI-GeneID: 100914664
NCBI-ProteinID: XP_031798710
Ensembl: ENSSHAG00000015946
Position
6:complement(196511699..196558067)
AA seq 549 aa
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLSMNAVDSPAASNHKQDVGISAAFLADVRPQTDG
CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
DLFAECAKMDEKGLKTMVSLGVKNPLLDLTALEDKSLDEGYGVSPVPSTSNSSKSIKENS
NAAIIKRFNHHSAMVLAAGLRKHEAQNDHNNENSSTDGNSRDSDFFQPPVKRVKLQESIE
YEDLGKNNSIKTIALSLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIKQEMETYTPQLT
QVLSSGAASSTITALSPGGALMQGGPQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCF
PVNTPFLEEKVVRMKSNLERFQATKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTW
QSRRLLKKT
NT seq 1650 nt   +upstreamnt  +downstreamnt
atggcaacttcatcggaagaagttttactgattgtaaagaaggtgcgtcagaagaagcaa
gatggagccctgtatctcatggcagaaagaatagcttgggcacctgaaggcaaagacagg
tttacaatcagccatatgtatgcggacattaaatgccagaaaatcagcccagaaggaaaa
gctaaaatccagcttcagctggtcctacatgcaggagacacaaccaatttccatttttcc
aatgaaagcacagctgtaaaggagcgagatgctgtgaaagaccttcttcagcagttgcta
cccaaattcaaaaggaaagccaataaagaactggaagagaaaaacagaatgctgcaagaa
gatcctgttttgtttcagctttataaagacctggttgtgagtcaggtgatcagtgctgag
gaattctgggccaatcgtttaagcatgaatgctgtggacagccctgcagcatccaatcac
aagcaggatgtgggcatttctgcagcatttctggctgatgtccgcccccaaacagatggc
tgtaatggcctaagatataatttaacttctgatatcattgagtccatatttaggacctac
ccagcagtgaaaatgaaatatgcagaaaacgttccacataacatgacagaaaaagagttc
tggacacgattttttcaatcccattattttcatagggatcggcttaacacagggtcaaaa
gatctttttgctgaatgtgccaaaatggatgaaaagggtttaaaaacaatggtatcacta
ggagtgaaaaaccctctactagatttgacagcactggaggataaatcattagatgagggc
tatggggtttcccctgtgccatctacttccaactcttcaaaatccataaaggagaatagc
aatgctgcaatcatcaaaagatttaaccatcatagtgctatggtcctggcagcaggtctc
aggaaacatgaagcacaaaatgatcacaacaatgaaaacagcagcacagatgggaactct
cgggattcggacttttttcaaccaccagtcaaaagggtgaagttacaagaatccattgaa
tatgaagacttgggaaaaaataatagcataaaaacaattgcactaagcttgaagaagtca
gataggtattatcatggcccaactccaattcagtccctccaatatgcaacaagtcaggat
attatcaattcttttcagagtattaagcaagagatggaaacttacacaccccaactaact
caggttctttcaagtggtgctgcaagtagtaccatcacagccctttcccctggaggagca
cttatgcagggaggaccacagcaagccataaaccagatggtgccaaatgacattcaatca
gaacttaaacacttgtatgtggctgtaggggagctgctgaggcatttctggtcctgtttt
ccagttaacacaccattcctagaagaaaaggtagtgaggatgaagagtaatttggaacga
ttccaagctactaagctctgcccattccaagaaaaaattcggagacagtatttaagcaca
aatttggtaagtcacatagaggagatgctgcagacggcctacaataaactgcacacctgg
cagtcccggcgcctgctgaagaagacgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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