KEGG   Sarcophilus harrisii (Tasmanian devil): 100916871
Entry
100916871         CDS       T02286                                 
Symbol
MSH3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
  KO
K08736  DNA mismatch repair protein MSH3
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr01524  Platinum drug resistance
shr03430  Mismatch repair
shr05200  Pathways in cancer
shr05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100916871 (MSH3)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100916871 (MSH3)
  09162 Cancer: specific types
   05210 Colorectal cancer
    100916871 (MSH3)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    100916871 (MSH3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shr03400]
    100916871 (MSH3)
DNA repair and recombination proteins [BR:shr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100916871 (MSH3)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II RhoGAP MutS_IV
Other DBs
NCBI-GeneID: 100916871
NCBI-ProteinID: XP_031822846
Ensembl: ENSSHAG00000016015
Position
1:171324614..171514342
AA seq 1167 aa
MRWRAVTSLSRGLGLGRGQRVLSHACAPDPGVVGAGGGLLSRWALLFVSSGRLLLMPRRK
PVAGRAGAALPAPAAARQAVLSRFFKPAGHLKSSSPAGAPGDSSCDSGAPPEQQEQQQSE
SGVNGSKKRMLEYDEPVNKRAKKAQGNKGEENDAGMIRSCEPKKCLRPRMILKSLEKLKE
FCCDSELPYSRSSTELPQRRLAVLPKCTDFEDISLNAKHIVPSEDSSSQKGGSLFDFTHF
SLSTKSHESLQSTSEPKPTNRRTKSIYTPLELQYLEMKEQHKDAILCIECGYKYRFFGED
AEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGHKVGVVKQTETAALKAIGENK
SSLFTRKLTALYTKSTLIGEDVNPLIKLDDPVNVEEITSDTSNNYLLCICENKENMKDKQ
KGNITIGIVGVQPTTGEVVFDSFQDSVSRSELETRISKLQPVELLLPSEMSDHTERFIRS
ITSVSVQDDRIRVERMDNLYFEYSHAFQQITEFYAEVLDIKASQSFSGILNLDKPVICSL
AAVIRYLKEFNLEKMLHNPRNLKKLSSELEFMTINGTALKNLEILQNQTDSKFRGSLLWV
LDHTKTPFGRRKLKKWVTQPLLKSREINARLDAVSEIILSESSVFGHIQNHLCKLPDIER
GLCSIYHKKCSTQEFFLIVKALCHLKREIQALIPAITSQIKSDLLKQFLLEIPEHLNPVE
HYFNILNEQAAKIGDKTELFKDLTDFPSISKRKEEIQVVTTKINLHLQEIRRILKSPSAH
FKTVLGQEFLIEVKNSLVSSIPSDWVKIGSTKAVSRFHSPFIVENYRHLNQLREQLVLDC
NTEWLNFLDHFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPILQEERKIVIKNGR
HPVIDVLLGEQDQYVPNSTYLSGDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP
AEQATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVILDELGRGTST
HDGIAIAYATLEHFIRDVESLTLFVTHYPPVCELEKTYPQWVGNYHMGFLVNEDESTQKP
GQEDEEIPDFVTFLYQITRGVASRSYGLNVAKLADVPEEILKKAAYKSKELERLVNVKRK
RLKSFAKLWNATDVTEVQEWTNTVETE
NT seq 3504 nt   +upstreamnt  +downstreamnt
atgcgctggcgggccgtgacgtcattgtcgcgcgggctgggacttggaagagggcagcgc
gtgctttctcacgcttgcgcaccggaccccggtgtagtgggggcggggggagggttactt
tcgcgctgggctctgcttttcgtgtcctctggccgcctgctcctaatgccgcggcggaag
ccagtcgccggcagggccggggccgccctgcctgctccagcggcggccaggcaagcggtg
ttgagtcgattctttaagccggcgggacaccttaagtcctcctccccagcgggggcacct
ggggactccagctgtgactctggagcgcccccggagcagcaggagcagcagcagtcggag
tctggagttaatggaagtaagaagaggatgctggaatatgatgagcctgttaacaagagg
gcaaagaaagctcaaggaaataaaggagaagaaaatgatgctggaatgatcaggagctgt
gaaccaaagaaatgtctgaggcccaggatgattttaaagtctctggaaaaattaaaagaa
ttctgctgtgattctgagcttccgtatagtagatcttcaactgaactgccacagaggaga
ttggcagttttaccaaaatgtacagattttgaagacattagtctaaatgcaaagcatatt
gttccctctgaagattccagttctcagaagggaggatcactttttgattttactcatttt
tcattatcaactaaaagtcatgaaagcctacagagtacatctgagcccaaacctactaac
agaagaaccaaaagcatttataccccattagaactgcaatacttagaaatgaaagaacaa
cataaagatgccatcttgtgtattgaatgtggatacaaatataggttctttggagaagat
gcagagattgcagcacgggaactcaacatatattgtcatttagatcataactttatgaca
gcaagcataccaactcacagactttttgttcatgtacgccgtcttgtggcaaaaggacat
aaggtgggagtagtcaagcaaactgaaactgcagcactgaaggctattggagagaataaa
agttctctctttactcgaaaattgactgctctttatactaaatctacacttattggagaa
gatgtgaatcctttgatcaagttagatgaccctgtaaatgttgaagaaataacaagtgac
acatctaacaattatctcctgtgcatctgtgaaaataaagaaaatatgaaagataaacaa
aaggggaatatcacaattggcattgtgggagtgcagcccacaactggtgaagtcgttttt
gatagtttccaggattcagtatctcgttcagaattagagacccgtatttcgaaattgcag
cctgtggaacttcttctaccctcggagatgtctgatcacacggaaagattcatcaggagt
ataacgtctgtcagtgtacaggatgacagaattcgagtagaaaggatggataacctttat
tttgaatacagtcatgctttccagcaaatcactgagttttatgcagaagtacttgatatc
aaagcttcccagagtttttctggaatattaaatttggataagcctgtgatttgctctttg
gcagcagttattcgatacctcaaagaatttaatttagagaaaatgctccataatcctaga
aatttaaaaaagttgtcaagtgaactggaatttatgacaattaatggtacagcactgaag
aatctggaaatcttacagaatcagacggattcaaaattcagaggcagtttgctatgggtc
ttagatcatactaaaactccttttgggcgacgaaaactaaagaagtgggtgactcagcca
ctcctcaaatcaagggaaatcaatgctcgacttgatgcagtgtcagagattattctctct
gagtccagtgtgtttggccacatacaaaatcatttgtgcaaattacctgatatagagaga
ggactctgcagtatttatcacaaaaagtgttccactcaagagttcttcttgattgttaaa
gccttgtgtcacctgaagagagaaattcaagcattaattcctgctatcacttcccaaatt
aaatcagacttgctcaaacaattccttctggaaattcctgaacatctcaacccagtggag
cactattttaatatccttaatgaacaagctgccaaaattggagataaaactgagttattc
aaggacctcacagatttcccctcaataagtaagaggaaagaggaaatacaagtggttact
accaaaatcaacctacatttgcaagaaatacgaagaatattaaaaagtccttctgcacat
ttcaaaacagtgttgggacaggagtttctcatagaagtaaagaactctcttgtatcttca
ataccatctgattgggttaagattggaagcacaaaagctgttagccgctttcactctcct
tttattgtagaaaattacagacatctgaatcagctccgggagcagctagtccttgactgc
aacactgaatggctaaattttttagatcatttcagtgaacactatcactctttgtgtaaa
gcggttcatcacttagcaactgtcgactgcattttctcactggccaaggtcgctaagcaa
ggagattattgcagaccaattttgcaagaagaaagaaaaatagtgataaaaaatggtcga
catcctgtgattgatgtgttattgggagagcaggatcagtatgttcccaatagtacatat
ttatcaggtgactctgaaagagtgatgataattactggaccgaacatgggtggaaagagc
tcctacataaaacaagttgcattgattactatcatggcacaaattggttcctatgttcct
gcagaacaagctacaattgggattgtagatggtattttcacaaggatgggagctgcagat
aatatatacaagggacagagtacctttatggaagaactgacagacacagcagagatcata
agaaaagcaacatcacaatccctagttatcttggatgaattgggaagagggacaagtact
catgatggaatcgccattgcttatgctactctggagcattttattcgagatgtggagtca
ttgaccttgtttgtcacacattatcctcctgtatgtgaactagaaaaaacttatccacag
tgggtagggaactaccacatgggattccttgttaatgaagatgaaagtacacaaaaacca
ggtcaggaagatgaagaaatccctgattttgtcacttttctttatcaaataaccagagga
gttgcttcaaggagttatgggctaaatgtagccaaactagcagatgtccctgaagaaatc
ttaaagaaagcggcttacaaatcaaaggaacttgaaagattagttaatgtgaaaaggaaa
agactgaaatcttttgcaaaactgtggaatgcaactgatgttacagaagtacaggaatgg
acaaacacagttgaaactgaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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